View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_19 (Length: 379)
Name: NF1589_low_19
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 360
Target Start/End: Complemental strand, 51837281 - 51836931
Alignment:
| Q |
4 |
acatcatcaatacaaacaaaatctagcaaatgtttgtttgtaagaaaatgaaaaggggaaagaaatcgtttgaatgctgcttgggtctattgtgggatac |
103 |
Q |
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| T |
51837281 |
acatcatcaatacaaacaaaatctagcaaatgtttgtttgtaagaaaatgaaaaggggaaagaaatcgtttgaatgctgcttgggtctattgtgggatac |
51837182 |
T |
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| Q |
104 |
tgatgctcacaactgctgatttagctca-aaaattttt-tcgcttgccaattcaatcatacaacactcctttttgcctgtgctctactccttaactctct |
201 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51837181 |
tgatgctcacaactgctgatttcgctcataaaatttttgtcgcttgccaattcaatcatacaacactcctttttgcctgtgctctactccttaactctct |
51837082 |
T |
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| Q |
202 |
catatgcaaccacaatggtatcattatctccctgtttgttgtaaatatattttcttgttagggattagata--------gtccaactgatttgaactaaa |
293 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| || |||||||||||||||||| |
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| T |
51837081 |
catatgcaaccacaatggtatcattatttccctg----------------tttcttgttaggggttagatagttcaagtgttcaactgatttgaactaaa |
51836998 |
T |
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| Q |
294 |
agaatatgagtttgaggtcgtaggtttaaatacgaacaaagagtaaaaatactattctaacaaacca |
360 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
51836997 |
agaatatgagtttgaggtcgtaggtttaaatctgaacaaagagtaaaaatactattttaacaaacca |
51836931 |
T |
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