View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_21 (Length: 367)
Name: NF1589_low_21
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 52393152 - 52392812
Alignment:
| Q |
1 |
aactcacaacaaagcagaagacaaaagcccaaaccgtagcacatgactagaaaaatccagaaaacacgatcctttgtttaggaaaaggaaaaaacaattt |
100 |
Q |
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| T |
52393152 |
aactcacaacaaagcagcagacaaaagcccaaaccgtagcacatgactagaaaaatccagaaaacacgatcctttgtttaggaaaaggaaaaaacaattt |
52393053 |
T |
|
| Q |
101 |
ttgttatgttaattaaatttaatactgaatttcctatatttacaatacatcttagaatccgttccccnnnnnnnnnnnnnnnnnttggtacagacatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
52393052 |
ttgttatgttaattaaatttaatactgaatttcctatatttacaatacatcttagaatccgttctcc---ttattattatttttttggtacagacatttc |
52392956 |
T |
|
| Q |
201 |
ccttatatgtgttgagtaaatatagaaaaataaataccaaaaccttatggataaattaacattattcaatgcagaattataagtggcaaaataaaattag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52392955 |
ccttatatgtgttgagtaaatatagaaaaataaataccaaaaccttatggataaattaacattattcaatgcagaattataagtggcaaaataaaattag |
52392856 |
T |
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| Q |
301 |
cgcccatataccaaccaaaccaacaattacattcgtgtcaccttaaaac |
349 |
Q |
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|||||||||||| |||||||||||||||||| ||||||| ||||| |
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| T |
52392855 |
cgcccatatacc-----aaccaacaattacattcgggtcacctgaaaac |
52392812 |
T |
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