View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_23 (Length: 358)
Name: NF1589_low_23
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 150 - 340
Target Start/End: Original strand, 24850298 - 24850488
Alignment:
| Q |
150 |
tcagattcttgatctgatatgggaaaggagtttttctcccgatgcacgaagcacagctgcttcaggttgagaaaacagcacagctgcagtgtgtgcctgc |
249 |
Q |
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| T |
24850298 |
tcagattcttgatctgatatgggaaaggagtttttctcccaattcacgaagcacagctgcttcaggttgagacaacagcacagctgcagtgtgtgcctgc |
24850397 |
T |
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| Q |
250 |
tccgccgttgtgttatttgccttcacagtcgtcaccttcagagcatattctccattgttcacgtcatcaacactaaccttgagtgcgttgt |
340 |
Q |
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| T |
24850398 |
tccgccgttgtgttatttgccttcacagtcgtcaccttcagagcatattctccattgttcacgtcatcaacactaaccttgagtgccttgt |
24850488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 24850152 - 24850276
Alignment:
| Q |
1 |
tacaacatagtaactgatctaagtaaatttatttgtcaaaattcaaaaattagtagaaacacagctgattctggagtggtattttattcgattggtaact |
100 |
Q |
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| T |
24850152 |
tacaacatagtaactgatctaagtaaatttatttgtcaaaattcaaaaattagtagaaacacagctgattctggagtggtattttattcgattggtaact |
24850251 |
T |
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| Q |
101 |
tgactaatatccaacctccaaactt |
125 |
Q |
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| T |
24850252 |
tgactaatgtccaacctccaaactt |
24850276 |
T |
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