View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_25 (Length: 310)
Name: NF1589_low_25
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 39263934 - 39264217
Alignment:
| Q |
17 |
aagaactataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaattcattgttgttgttagctaatggttctgtgttacatcatgga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39263934 |
aagaactataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaattcattgttgttgttagctaatggttctgtgttacatcatgga |
39264033 |
T |
|
| Q |
117 |
actgctgatttactgagtgtgaatttgagattaatgagtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattgatatcattc |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39264034 |
actgctgatttactgagtgtgaatttgagattgatgggtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattgatgtcattc |
39264133 |
T |
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| Q |
217 |
aacaacaacaacaatggcaggtggaaaccgaaacaccaaggcgattgcaagggacaacgcaacaaaagaaaggcggagatgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39264134 |
aacaacaacaacaatggcaggtggaaaccgaaacaccaaggcgattgcaagggacaacgcaacaaaagaaaggcagagatgatg |
39264217 |
T |
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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 44067667 - 44067858
Alignment:
| Q |
17 |
aagaactataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaattcattgttgttgttagctaatggttctgtgttacatcatgga |
116 |
Q |
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|||||||||||||||||||||||||||||| || ||| | ||||||||| |||| |||||| | ||||||| | ||||| |||||||||||||||| |
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| T |
44067667 |
aagaactataatactaagtattcatcaacccgggttccggatagtgaagttgttgaattcaatactgttgttggtgaatggcagtgtgttacatcatgga |
44067766 |
T |
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| Q |
117 |
actgctgatttactgagtgtgaatttgagattaatgagtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattga |
208 |
Q |
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||||| ||||| || ||||||| |||| || ||| || ||||||||||||||||||| || | ||||| ||||||||||| |||||||| |
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| T |
44067767 |
actgcagatttgttggatgtgaatctgaggttgatgggtttagagcttcctcttcatgtcaacattgttgagtttgctattgaatccattga |
44067858 |
T |
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