View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_28 (Length: 274)
Name: NF1589_low_28
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 24793519 - 24793270
Alignment:
| Q |
16 |
ccaacttcatccctggtgattttccaacactattctataattgttcaaagcttgtttacttagatctttctatgaacaattttgatggtattattcctaa |
115 |
Q |
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| T |
24793519 |
ccaacttcatccctggtgattttccaacactattctataattgttcaaagcttgtttacttagatctttctatgaacaattttgatggtattattcctaa |
24793420 |
T |
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| Q |
116 |
tgatattggaaatttgagtactagtttgcaatatcttaatcttggttcaacaaattttcatggtggtgttcctgatgggattggaaagttgaaggagttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24793419 |
tgatattggaaatttgagtactagtttgcaatatcttaatcttggttcaacaaattttcatggtggtgttcctgatgggattggaaagttgaaggagttg |
24793320 |
T |
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| Q |
216 |
agagagcttagaattcaatattgtttattgaatggtactgtttctgatga |
265 |
Q |
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| T |
24793319 |
agagagcttagaattcaatattgtttattgaatggtactgtttctgatga |
24793270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 31118448 - 31118520
Alignment:
| Q |
190 |
atgggattggaaagttgaaggagttgagagagcttagaattcaatattgtttattgaatggtactgtttctga |
262 |
Q |
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| T |
31118448 |
atggaattggaaagttaaaggaattaagagaacttataattcaatattgtttattgaatagtactgtttctga |
31118520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 7361847 - 7361721
Alignment:
| Q |
88 |
tgaacaattttgatggtattattcctaatgatattggaaatttgagtactagtttgcaata---tcttaatcttggttcaacaaattttcatggtggtgt |
184 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||| ||||||| |||||| |||||||||| ||||||||| |
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| T |
7361847 |
tgaacaattttgatggtattattcctaatgatatatgaaatttgaatactaattttcaatattttcttaattttggtttaacaaattttactggtggtgt |
7361748 |
T |
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| Q |
185 |
tcctgatgggattggaaagttgaagga |
211 |
Q |
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|||| || | |||||||||||||||| |
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| T |
7361747 |
tcctcatagatttggaaagttgaagga |
7361721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 42660210 - 42660283
Alignment:
| Q |
189 |
gatgggattggaaagttgaaggagttgagagagcttagaattcaatattgtttattgaatggtactgtttctga |
262 |
Q |
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||||| ||||||||||| ||||| || |||| |||| |||||||||||||||||||||| ||||||||||||| |
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| T |
42660210 |
gatggaattggaaagttaaaggaattaggagaacttataattcaatattgtttattgaatagtactgtttctga |
42660283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 42662215 - 42662142
Alignment:
| Q |
189 |
gatgggattggaaagttgaaggagttgagagagcttagaattcaatattgtttattgaatggtactgtttctga |
262 |
Q |
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||||| ||||||||||| ||||| || ||||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
42662215 |
gatggaattggaaagttaaaggaattaagagaacttataattcaatattgtttattgaataacactgtttctga |
42662142 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 50053702 - 50053629
Alignment:
| Q |
189 |
gatgggattggaaagttgaaggagttgagagagcttagaattcaatattgtttattgaatggtactgtttctga |
262 |
Q |
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||||| |||||||| || ||||| || ||||| |||| |||||||||||||||||||||| ||||||||||||| |
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| T |
50053702 |
gatggaattggaaaattaaaggaattaagagaacttataattcaatattgtttattgaatagtactgtttctga |
50053629 |
T |
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