View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1589_low_29 (Length: 267)

Name: NF1589_low_29
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1589_low_29
NF1589_low_29
[»] chr3 (1 HSPs)
chr3 (25-251)||(46594936-46595142)
[»] chr6 (2 HSPs)
chr6 (25-251)||(4435696-4435902)
chr6 (26-251)||(4091917-4092123)
[»] chr1 (4 HSPs)
chr1 (34-150)||(26496041-26496157)
chr1 (126-251)||(25868894-25869020)
chr1 (124-251)||(16960887-16961015)
chr1 (46-89)||(16960829-16960872)
[»] chr4 (1 HSPs)
chr4 (25-251)||(47521179-47521386)
[»] chr5 (2 HSPs)
chr5 (25-180)||(37719256-37719392)
chr5 (197-251)||(30440559-30440612)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 46594936 - 46595142
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||                    |    
T  46594936 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatc--------------------t 46595015  T
Q  125 gtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgtttt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  46595016 gtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcctccgttctttttaccactttttattctcaaaaataccattg-ttt 46595114  T
Q  224 gttcaatataacaacaaaatataaaatt 251  Q
    ||||||||||||||||||||| ||||||    
T  46595115 gttcaatataacaacaaaatacaaaatt 46595142  T

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Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 4435902 - 4435696
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||                    |    
T  4435902 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatc--------------------t 4435823  T
Q  125 gtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgtttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||    
T  4435822 gtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagtctccgttctttttaccactttttattctcaaaaataccattg-ttt 4435724  T
Q  224 gttcaatataacaacaaaatataaaatt 251  Q
    ||||||||||||||||||||| ||||||    
T  4435723 gttcaatataacaacaaaatacaaaatt 4435696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 4092123 - 4091917
Alignment:
Q  26 cacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttatg 125  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |                    ||    
T  4092123 cacattggtaaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcacc--------------------tg 4092044  T
Q  126 tcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgtttt 223  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||    
T  4092043 tcaaaatacatagcttcaacattcttaacaattttggttgaattaaacagagcctgccgttctttttaccactttttattctcaaaaataccattg-ttt 4091945  T
Q  224 gttcaatataacaacaaaatataaaatt 251  Q
    ||||||||||||||||||||| ||||||    
T  4091944 gttcaatataacaacaaaatacaaaatt 4091917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 26496157 - 26496041
Alignment:
Q  34 taaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttatgtcaaaata 133  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26496157 taaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttatgtcaaaata 26496058  T
Q  134 catagcttcaacattct 150  Q
    |||||||||||||||||    
T  26496057 catagcttcaacattct 26496041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 126 - 251
Target Start/End: Complemental strand, 25869020 - 25868894
Alignment:
Q  126 tcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgtttt 223  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||    
T  25869020 tcaaaatacatagcttcaacattcttaacaattttggttgaattaaacagagcctgcagttctttttaccactttttattctcaaaaataccattg-ttt 25868922  T
Q  224 gttcaatataacaacaaaatataaaatt 251  Q
    ||||||||||||||||||||| ||||||    
T  25868921 gttcaatataacaacaaaatacaaaatt 25868894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 16960887 - 16961015
Alignment:
Q  124 tgtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgtt 221  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||||||||||| ||||||||||||||||||||||| |    
T  16960887 tgtcaaaatacatagcttcaacattcttaacaattttggttgaattaaacagagcatgccattctttttaccactttttattctcaaaaataccattg-t 16960985  T
Q  222 ttgttcaatataacaacaaaatataaaatt 251  Q
    ||||||||||||||||||||||| ||||||    
T  16960986 ttgttcaatataacaacaaaatacaaaatt 16961015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 16960829 - 16960872
Alignment:
Q  46 aaaaacagtgatatacaacctgttaaaacaaaagagattctaca 89  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  16960829 aaaaacagtgatataaaacctgttaaaacaaaagagattctaca 16960872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 47521386 - 47521179
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttat 124  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||   ||||||||| |                    |    
T  47521386 tcacattggtaaacaaattctaaaaacaatgatatacaacctgtttaaacaaaagagattctacattgacaaatgcacc--------------------t 47521307  T
Q  125 gtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||    
T  47521306 gtcaaaatacatagcttcaacattcttaacaattttggttgaattaaacagaacctgccgttctttttaccactttttattctcaaaaataccattg-tt 47521208  T
Q  223 tgttcaatataacaacaaaatataaaatt 251  Q
    |||||||||||||||||||||| ||||||    
T  47521207 tgttcaatataacaacaaaatacaaaatt 47521179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 37719256 - 37719392
Alignment:
Q  25 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||                    |    
T  37719256 tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatc--------------------t 37719335  T
Q  125 gtcaaaatacatagctt-caacattctgaacaattttggttgaactaaacagagcct 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37719336 gtcaaaatacatagcttccaacattctgaacaattttggttgaactaaacagagcct 37719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 30440559 - 30440612
Alignment:
Q  197 ttttattctcaaaaataccattgttttgttcaatataacaacaaaatataaaatt 251  Q
    ||||||||| ||||| |||||||||| |||||||| |||||||||||| ||||||    
T  30440559 ttttattctaaaaaacaccattgttt-gttcaataaaacaacaaaatacaaaatt 30440612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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