View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_3 (Length: 539)
Name: NF1589_low_3
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_3 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 57 - 527
Target Start/End: Complemental strand, 4194 - 3723
Alignment:
| Q |
57 |
ctatcacaatccaaaaggtatgcattcttggcctttctgaggacttgaaagatgacattgagaaaatttcagtatacattcttggcctttgcatgagttt |
156 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4194 |
ctatcacaacccaaaaggtatgcattcttggcctttctcaggacttgaaagatcacattgagaaaatttcagtatgcattcttggcctttgcatgagttt |
4095 |
T |
|
| Q |
157 |
cttctcatatgaccctcccacatcagagatagtgaaagagtttacgatatttgctgcgtcgtcatttgtatgttacattctctcaatcatcctcaagaaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4094 |
cttctcatatgaccctcccacatcagagatagtgaaagagtttacgatatttgctgcgtcgtcatttgtatgttacattctctcaatcatcctcaagaaa |
3995 |
T |
|
| Q |
257 |
accctaatgctctgcccaacctggaccagccgccgcgccataactttgatatgtgattttctatttttctttggatggtgcttttacgcgctgctcatgc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3994 |
accctaatgctctgcccaacctggaccagccgccgcgccataactttgatatgtgattttctatttttctttggatggtgcttttacgcgctgctcatgc |
3895 |
T |
|
| Q |
357 |
tccaatatgtcattcctctcaaagatcttggcctctccactttcactataactatactctatctactctctactgttgttgctgccccc-tttgatgtat |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3894 |
tccaatatgtcattcctctcaaagatcttggcctctccactttcactacaactatactctatctactctctactgttgttgctgcccccttttgatgtat |
3795 |
T |
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| Q |
456 |
gtggctagcatgcatcttgtttatttactcagtatcattgttattttcatttatatatgcagattgttcctt |
527 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3794 |
gtggctagcatgcaacttgtttatttacccagtatcattgttattttcatttatatatgcagattgttcctt |
3723 |
T |
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