View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_30 (Length: 262)
Name: NF1589_low_30
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 42534807 - 42535054
Alignment:
| Q |
7 |
acatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactccacatagattccaaaacatgcgtttcag |
106 |
Q |
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| T |
42534807 |
acatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactccacatagattccaaaacatgcgtttcag |
42534906 |
T |
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| Q |
107 |
tcatgaacttgacactcat-------aacataaatctcctccacatatcttgccctttttgatgggaaggaccaaaattgttcagatcactgctgctaaa |
199 |
Q |
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| T |
42534907 |
tcatgaacttgacactcatcattctaaacataaatctcctccacatatcttgccctttttgatgggaaggaccaaaattgttcagatcactgctgctaaa |
42535006 |
T |
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| Q |
200 |
aacattgtatttgttcttgccgaatctggtctttgtgcagcttttagt |
247 |
Q |
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| T |
42535007 |
aacattgtatttgttcttgccgaatctggtctttgtgcagcttttagt |
42535054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 42528235 - 42528315
Alignment:
| Q |
7 |
acatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactccacatagat |
87 |
Q |
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| T |
42528235 |
acatcatcaagaaccttcaagaccgcgagttatcttctaaacctcatcgtgcttttgttgctgttactgccccacatagat |
42528315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 27820188 - 27820306
Alignment:
| Q |
7 |
acatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactccacatagattccaaaacatgcgtttcag |
106 |
Q |
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| T |
27820188 |
acatcatcaagaagcttcaaactcgcgagatttctcctaaacctcatcgttcctttgttgctgctacttcaccacatagattccagaacatgcgtttgac |
27820287 |
T |
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| Q |
107 |
tcatgaacttgacactcat |
125 |
Q |
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|||| || |||| |||||| |
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| T |
27820288 |
tcatcaatttgatactcat |
27820306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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