View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_34 (Length: 253)
Name: NF1589_low_34
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27294770 - 27295016
Alignment:
| Q |
1 |
atagactctggagcttatgaaggtttaggtttgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagat |
100 |
Q |
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| T |
27294770 |
atagactctggagcttatgaaggtttaggtttgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagat |
27294869 |
T |
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| Q |
101 |
atattattatcgacaaaggagcattgcattatctgaaaaagcttcagttaggctcaattccccgatttgagaatataccgactggcatccaacacataga |
200 |
Q |
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| T |
27294870 |
atattattatcgacgaaggagcattgccttatctgaaaaagcttcagttaggctcaattccccgacttgagaatgtaccgactggcatccaacacataga |
27294969 |
T |
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| Q |
201 |
gaagcttgaagttcttcatatttggcttatgcctattgaatctgtgc |
247 |
Q |
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| T |
27294970 |
gaagcttgaagttcttcatatttggcttatgcctattgaatctgtgc |
27295016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 30987861 - 30987770
Alignment:
| Q |
32 |
tgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagatatattattatcgacaaaggagca |
123 |
Q |
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| T |
30987861 |
tgtattttcaagatggatggtttccgaaactaaaagaactgtacattggatcttcggatgaattgacagatattattatcgacaaaggagca |
30987770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 21939032 - 21939241
Alignment:
| Q |
16 |
tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagatatattattatcgaca |
115 |
Q |
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| T |
21939032 |
tatgaaggtttaggtttgcattttcatgatggagagtttcagaaactaaaggaactggaagttagaggttgcattgaattgaaggaaattattatcgaca |
21939131 |
T |
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| Q |
116 |
aaggagcattgcattatctgaaaaagcttcagttaggctcaattccccgatttg-agaatataccgactggcatccaacacatagagaagcttgaagttc |
214 |
Q |
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| T |
21939132 |
aaggatcaatgccttccctaaaaaagcttaagtta-gtgcaacccctcaatctgaagaatatacctactggcattgaacacttagagaagcttgaagatc |
21939230 |
T |
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| Q |
215 |
ttcatatttgg |
225 |
Q |
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| T |
21939231 |
tctatatttgg |
21939241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 22036562 - 22036603
Alignment:
| Q |
170 |
agaatataccgactggcatccaacacatagagaagcttgaag |
211 |
Q |
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| T |
22036562 |
agaatatacccactggcatccaacacttggagaagcttgaag |
22036603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 22117130 - 22117171
Alignment:
| Q |
170 |
agaatataccgactggcatccaacacatagagaagcttgaag |
211 |
Q |
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| T |
22117130 |
agaatatacccactggcatccaacacttggagaagcttgaag |
22117171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 21932309 - 21932361
Alignment:
| Q |
16 |
tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaagga |
68 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||||| ||||||||| |
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| T |
21932309 |
tatgaaggtttacaattgcattttcaagatggagggtttcagaaactaaagga |
21932361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 21947672 - 21947712
Alignment:
| Q |
170 |
agaatataccgactggcatccaacacatagagaagcttgaa |
210 |
Q |
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|||||||||| ||||||||||||||| | |||||||||||| |
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| T |
21947672 |
agaatatacccactggcatccaacacttggagaagcttgaa |
21947712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 22029892 - 22029944
Alignment:
| Q |
16 |
tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaagga |
68 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||||| ||||||||| |
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| T |
22029892 |
tatgaaggtttacaattgcattttcaagatggagggtttcagaaactaaagga |
22029944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 22106756 - 22106796
Alignment:
| Q |
170 |
agaatataccgactggcatccaacacatagagaagcttgaa |
210 |
Q |
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|||||||||| ||||||||||||||| | |||||||||||| |
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| T |
22106756 |
agaatatacccactggcatccaacacttggagaagcttgaa |
22106796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 22188880 - 22188932
Alignment:
| Q |
16 |
tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaagga |
68 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||||| ||||||||| |
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| T |
22188880 |
tatgaaggtttacaattgcattttcaagatggagggtttcagaaactaaagga |
22188932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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