View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_39 (Length: 247)
Name: NF1589_low_39
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 50639386 - 50639157
Alignment:
| Q |
18 |
gtttactgatcagcagttgtaatctgaaagatacatattggataggcagtaccatgatgcacaattataactgaaacaactttgtacaaatattatcatt |
117 |
Q |
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| T |
50639386 |
gtttactgatcagcagttgtaatctgaaagatacatattggataggcagtaccatgatgcacaattataactgaaacaactttgtacaaatattatcatt |
50639287 |
T |
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| Q |
118 |
tttcataagtggtttcgttgggcagtgtttgcaagttgaatgtaacagtttatacagatcattaatgttcatcttaagtactattaaagctgtccagcaa |
217 |
Q |
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| T |
50639286 |
tttcataagtggtttcgttgggcagtgtttgcaagttgaatgtaacagtttatacagatcattaatgttcatcttaagtactattaaagctgtccagcaa |
50639187 |
T |
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| Q |
218 |
aatttccgtgcataatatattcagattttt |
247 |
Q |
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| T |
50639186 |
aatttccgtgcataatatattcagattttt |
50639157 |
T |
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