View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1589_low_4 (Length: 534)
Name: NF1589_low_4
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Complemental strand, 45294806 - 45294287
Alignment:
| Q |
19 |
gtatggacccgtctttattaaacttttacctcatgaagttttatcaagatgattggtataggtaggtataaaatattggttcaatctactcaaatactag |
118 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294806 |
gtatggacacgtctttattaaacttgtacctcatgaagttttatcaagatgattggtataggtaggtataaaatattggttcaatctactcaaatactag |
45294707 |
T |
|
| Q |
119 |
ggtcggatataaaagatatatacaatctcttaatatgcagtagccaaaattagttcatgact----aaattgatggc-------------gtgcatgcat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
45294706 |
ggtcggatataaaagatatatacaatctcttaatatgcagtagccaaaattagttcatgactgactaaattgatggcttcattttatggcgtgcatgcat |
45294607 |
T |
|
| Q |
202 |
gaagacaaacaatgctgaataattataaaagaaacatcgtagtacatcactgatatttatcatacaaatcgattgtgtgcccttgtaactatggaagaac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||| || |
|
|
| T |
45294606 |
gaagacaaacaatgctgaataattataaaagaaacatcgtagtacatcactgat---tatcatacaaatcaattgtgtgccctggtaactatagaagtac |
45294510 |
T |
|
| Q |
302 |
gttgattctttacgatcaatttttaacctatttatttatgacaaatgagatcgttgaatcgagatcacaaattagataatcagattttcaatttaataat |
401 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
45294509 |
gttgattctttaccatcaatttttaacctattcat----gacaaatgagatcgttgaatcgagatcacaaattagataatcagattttaaatttagtaat |
45294414 |
T |
|
| Q |
402 |
tnnnnnnntcaaaatctatattaaaatttagattttcaatctcaattcaacgaccacggttatcctcctcaatacataaatacatgtaaaatgacacaat |
501 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
45294413 |
taaaaaaatcaaaatctatattaaaatttagattt-caatttcaattcaacgaccacgattatcttcctaaatacatagatacatgtaaaatgacacaat |
45294315 |
T |
|
| Q |
502 |
aaaaatctaattttagagtattatctac |
529 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
45294314 |
aaaaatctaattttagagtattttctac |
45294287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University