View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_41 (Length: 246)
Name: NF1589_low_41
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 25974335 - 25974099
Alignment:
| Q |
7 |
agattaaaatagcatgagggtttgtctctattgttttgannnnnnnnatgttcggtggttgatcttattgttgtaagttatcattctcgat----gaggt |
102 |
Q |
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| T |
25974335 |
agattaaattagcatgagggtttttctctattgttttgattttttt-atgtccggtggttgatcttattgtggtaagttatcattctcgatcgatgaggt |
25974237 |
T |
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| Q |
103 |
ttaaaacttgatccatttcaaaatggaaaggttttacctaatttttt----atgctcaaaggtggaacgtgttgttgtaagctctcttcctcgatgaggc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
25974236 |
ttaaaacttgatccatttcaaaatggaaaggttttacctaattttttttttatactcaaaggtggaacttgttgtggtaagctctcttcctcgatgaggc |
25974137 |
T |
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| Q |
199 |
ttaaaatgtatcagttgtgggatgaatttttacctatg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
25974136 |
ttaaaatgtatcagttgtgggatgaatttttacctatg |
25974099 |
T |
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