View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_46 (Length: 238)
Name: NF1589_low_46
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_46 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 9192719 - 9192500
Alignment:
| Q |
19 |
tttcttaggtttaaaaagagagagggcctgtatatagcatttaaaacactcgactaccaaggcataaagaagggacagagcattaaaatccatagtatta |
118 |
Q |
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| T |
9192719 |
tttcttaggtttaaaaagagagagggcctgtatatagcatttaaaacactcgactaccaaggcataaagaagggacagagcattaaaatccatagtatta |
9192620 |
T |
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| Q |
119 |
gctccatgctgttttttaccttattttaacccataacgccatgccctttaggcattgagttttaatgttgcatctctttgagaaactgcatggtttctag |
218 |
Q |
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| T |
9192619 |
gctccatgctgttttttaccttattttaacccataacgccatgccctttaggcattgagttttaatgttgcatctctttgagaaactgcatggtttctag |
9192520 |
T |
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| Q |
219 |
gttgtttaaaagtcaaattt |
238 |
Q |
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|||| ||||||||||||||| |
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| T |
9192519 |
gttgcttaaaagtcaaattt |
9192500 |
T |
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