View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_5 (Length: 496)
Name: NF1589_low_5
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_5 |
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| [»] chr3 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 1628948 - 1629446
Alignment:
| Q |
1 |
agcaactgccaaaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagt |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
1628948 |
agcaactgccacaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatatttttaaaatgacaagatgcttatttgttacttagt |
1629047 |
T |
|
| Q |
101 |
ttctgacatattgactttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatgaataat---atctctct |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
1629048 |
ttctgacatattgactttttaaacatagatccgctggatcatcaaagttgaacttgtaaagtagtacaaaattaaagaatatgaataattatatctctct |
1629147 |
T |
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| Q |
198 |
caatatacaaattaaagaatattgacacattttctttttagaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagata |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
1629148 |
caatatacaaattaaagaatattgacacattttcttttaagaattacaatgaatttaattacaaataactatgtagaataattgaattaatgaagagata |
1629247 |
T |
|
| Q |
298 |
tagctataccataaaacaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaact |
397 |
Q |
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| T |
1629248 |
tagctataccaaaatacaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaact |
1629347 |
T |
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| Q |
398 |
ttgatgcttcctttgggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
496 |
Q |
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| T |
1629348 |
ttgatgcttcctttgggtttgatatcacatgataaccaggccatttcaccctatttgctgttgatgaaccaggtccataattctcatactctccataat |
1629446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 237 - 496
Target Start/End: Original strand, 1605891 - 1606148
Alignment:
| Q |
237 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
336 |
Q |
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|||||||||||||| ||||||||| | || || ||| ||||| ||| |||||||| ||| |||||| || || | |||||||||||||||||||||| |
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| T |
1605891 |
agaattacaatgaacttaattacaaagaattaagtacaataactgaggcaatgaagaaata--gctatagcacaacataaatgatcaaagaccagatgta |
1605988 |
T |
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| Q |
337 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtttgttatcacatgataaccag |
436 |
Q |
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| T |
1605989 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaactttgatgcttcattagggtttgatatcacatgataaccag |
1606088 |
T |
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| Q |
437 |
gccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
496 |
Q |
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| T |
1606089 |
gccattttactctatttgctgttgatgaaccaggtccataattctcatactctccataat |
1606148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 313 - 496
Target Start/End: Complemental strand, 10821435 - 10821252
Alignment:
| Q |
313 |
acaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10821435 |
acaaatgatcaaagaccagatgtaaatggcacagtagttttagccaaccatgttggaccagcaaggagtccagcaaccgtaaactttgatgcttcctttg |
10821336 |
T |
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| Q |
413 |
ggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
496 |
Q |
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| T |
10821335 |
ggtttgttatcacatgataaccaggccaatttaccctgtttgttgttgatgaaccaggtccataattctcatactctccataat |
10821252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 297 - 496
Target Start/End: Original strand, 1623071 - 1623270
Alignment:
| Q |
297 |
atagctataccataaaacaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaac |
396 |
Q |
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||||||||| || || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1623071 |
atagctatagcacaacataaatgatcaaagaccagatgtaaatggcacggtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaac |
1623170 |
T |
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| Q |
397 |
tttgatgcttcctttgggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
496 |
Q |
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| T |
1623171 |
tttgatgcttcctttcggtttgttatcacatgataaccaggccattttactctatttgttgttgatgaaccaggtccatagttttcatactctccataat |
1623270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 10821678 - 10821438
Alignment:
| Q |
15 |
gcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgacatattga |
114 |
Q |
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|||| |||||||||||||| ||||||||||||||||| || ||| | | ||||| ||| ||| ||| |||||||||||| |||||| ||| ||||||| |
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| T |
10821678 |
gcgacgcatggcctcatgcgcctcgcgcataggactt--ttctattttt-tttttaaaattacaagattcttatttgttacatagtttatgatatattga |
10821582 |
T |
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| Q |
115 |
ctttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatgaataata---tctctctcaatatacaaatta |
211 |
Q |
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||||||||||||| ||| || | |||||||||| ||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
10821581 |
ctttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtacaaag-----gaatatgaataataatatctctctcaatatacaaatta |
10821487 |
T |
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| Q |
212 |
aagaatattgacacattttctttttagaattacaatgaatttaattaca |
260 |
Q |
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| T |
10821486 |
aagaatattgactcatgttcttacaaaaattacaatgaatttaattaca |
10821438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 237 - 496
Target Start/End: Original strand, 18780707 - 18780964
Alignment:
| Q |
237 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
336 |
Q |
| |
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|||||||||||||||||||||||| | || || ||| ||||||||| |||||||| ||| |||||| || || | ||| |||||||||||||||||| |
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| T |
18780707 |
agaattacaatgaatttaattacaaagaattaagtacaataattgaagcaatgaagaaata--gctatagcacaacataaaagatcaaagaccagatgta |
18780804 |
T |
|
| Q |
337 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtttgttatcacatgataaccag |
436 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
18780805 |
aatggcacagtagttgtagccagccatgttggtccagtaatgagtccagcaaccgtaaactttgatgcttccttagggtttgttatcgcatgataaccag |
18780904 |
T |
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| Q |
437 |
gccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
496 |
Q |
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||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18780905 |
gccattttactctatttgctgttgatgaaccaggtccataattctcatactcgccataat |
18780964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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