View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_56 (Length: 232)
Name: NF1589_low_56
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_56 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 4116221 - 4116437
Alignment:
| Q |
16 |
ataaataaataaatgctgccttaatctccatatccttcttaagcacaattcatatttccctcagggcctatctctgcctgcttcatgctccaagcattca |
115 |
Q |
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| T |
4116221 |
ataaataaataaatgctgccttaatctccatatccttcttaagcacaatttatatttccctcatggcctatctctgcctgcttcatgctccaagcattca |
4116320 |
T |
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| Q |
116 |
gttttgagataacaacactctgacttccattgttgaatacataaagatgggcctctttttagatagccaataagggataaactttactttgtagcacagc |
215 |
Q |
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| T |
4116321 |
gttttgagataaccacactctgacttccattgttgaatacataaagatgtgcatctttttctatagccaataagggataaactctacttgttatcacagc |
4116420 |
T |
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| Q |
216 |
attccctccatctccaa |
232 |
Q |
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| T |
4116421 |
tttccctccatctccaa |
4116437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 232
Target Start/End: Original strand, 4141238 - 4141383
Alignment:
| Q |
87 |
ctctgcctgcttcatgctccaagcattcagttttgagataacaacactctgacttccattgttgaatacataaagatgggcctctttttagatagccaat |
186 |
Q |
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| T |
4141238 |
ctctgcttgattcatgctccaagcatttagttctgagataaccacactctgacttccatcattgaatacaaaaagatgtgcatctttctctatagccaat |
4141337 |
T |
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| Q |
187 |
aagggataaactttactttgtagcacagcattccctccatctccaa |
232 |
Q |
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| T |
4141338 |
aagggataaactctacttgttatcacaactttccctccatctccaa |
4141383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 4127255 - 4127366
Alignment:
| Q |
87 |
ctctgcctgcttcatgctccaagcattcagttttgagataacaacactctgacttccattgttgaatacataaagatgggcctctttttagatagccaat |
186 |
Q |
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| T |
4127255 |
ctctgcttgcttcatgctccaagcatttagttgtgaaatagccacactttggcttccattgttgaatacataaagatgtgcatatttctctatagccaat |
4127354 |
T |
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| Q |
187 |
aagggataaact |
198 |
Q |
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| T |
4127355 |
aagggataaact |
4127366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 4136187 - 4136297
Alignment:
| Q |
94 |
tgcttcatgctccaagcattcagttttgagataacaacactctgacttccattgttgaatacataaagatgggcctctttttagatagccaataagggat |
193 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||| || ||||||| ||||||||| ||||||| || ||||| | |||| |||||||||| |
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| T |
4136187 |
tgcttcatgctccaagcattcagttgtgagataaccacactttggcttccatcattgaatacaaaaagatgtgcatctttatctgtagcaaataagggat |
4136286 |
T |
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| Q |
194 |
aaactttactt |
204 |
Q |
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| T |
4136287 |
aagctctactt |
4136297 |
T |
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