View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1589_low_57 (Length: 227)
Name: NF1589_low_57
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_57 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5997838 - 5998064
Alignment:
| Q |
1 |
agtgataaactctaggctaattaaaaagtgccccaaaactctcccagttctcacttagctgtgcaacacccttatttcctcctactacattctgtttctc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5997838 |
agtgataaactctaggctaattcaaaagtgccccaaaactctcccagttctcacttagctgtgcaacacccttatttcctcctactacattctgtttctc |
5997937 |
T |
|
| Q |
101 |
tgtcagtttacaactatatcagtttacaactctatttccctccttactttcctttctactctttctcacatagaccttaatgaatgctctcctatatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5997938 |
tgtcagtttacaactatatcagtttacaactctatttccctccttactttcctttctactctttctcacatagaccttaatgaatgctctcctatatggt |
5998037 |
T |
|
| Q |
201 |
tcttaacagacgctattccaaatacaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5998038 |
tcttaacagacgctattccaaatacaa |
5998064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 5631244 - 5631163
Alignment:
| Q |
129 |
actctatttccctccttactttcctttctactctttctcacatagac---cttaatgaatgctctcctatatggttcttaac |
207 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||| ||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
5631244 |
actctattttcctccctactttcctttctattctttttcacaaggaccttcttaatgaatgctctcctatcaggttcttaac |
5631163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 5631291 - 5631250
Alignment:
| Q |
69 |
cccttatttcctcctactacattctgtttctctgtcagttta |
110 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
5631291 |
cccttgttccctcctactacattctgttactctgtcagttta |
5631250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University