View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_65 (Length: 205)
Name: NF1589_low_65
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 34593022 - 34593203
Alignment:
| Q |
8 |
aggagcagagagagatggcggaagcttgaagggagtgacactgaagaaggtagaaagactcaaaggtttcttaaaaattgcatttttattcatttgtgaa |
107 |
Q |
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| T |
34593022 |
aggagaagagagagatggcgaaagcttgaagagagtgacactgaagaaggaagaaagactcaaaggtttcttaaaaattgcatttttattcatttgtgaa |
34593121 |
T |
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| Q |
108 |
ttgtgattggtccatggaagcaacaaaat-ttgggtcccaattttcaaccaataaggatcaagataacacgtattatgattc |
188 |
Q |
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| T |
34593122 |
ttgtgattggtccatggaagcaacaaaatagtgggtcccaattttcaaccaataaggaacaagataccacgtattatgattc |
34593203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 34737155 - 34737337
Alignment:
| Q |
8 |
aggagcagagagagatggcggaagcttgaagggagtgacactgaagaaggtagaaagactcaaaggtttcttaaaaattgcatttttattcatttgtgaa |
107 |
Q |
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| T |
34737155 |
aggagaagagagaagtgacggaagcttgaagagagtaacactgaagaaggaagaaagactcaaaggtttcttaaaaattgcatttttattaatttgtgaa |
34737254 |
T |
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| Q |
108 |
ttgtgattggtccatggaagcaacaaaat-ttgggtcccaa-ttttcaaccaataaggatcaagataacacgtattatgattc |
188 |
Q |
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| T |
34737255 |
ttgtgattggtccatggaagcaacaaaatagtgggtcccaatttttcaaccaataaggaacaagatcccacatattatgattc |
34737337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 28466578 - 28466394
Alignment:
| Q |
8 |
aggagcagagagagatggcggaagcttgaagggagtgacactgaagaaggtagaaagactcaaaggtttcttaaaaattgcatttttattcatttgtgaa |
107 |
Q |
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||||| ||||||| || ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28466578 |
aggagaagagagaagtgacggaagcttgaagagagtaacactgaagaaggaagaaagactcaaaggtttcttaaaaattgcatttttattaatttgtgaa |
28466479 |
T |
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| Q |
108 |
ttgtgattggtccatggaagcaacaaaat-ttgggtcccaatttt--caaccaat-aaggatcaagataacacgtattatgattc |
188 |
Q |
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| T |
28466478 |
ttgtgattggtccatggaagcaacaaaatagtgggtcccaatttttctaaccaataaaggaacaagatcccacatattatgattc |
28466394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 34621468 - 34621524
Alignment:
| Q |
8 |
aggagcagagagagatggcggaagcttgaagggagtgacactgaagaaggtagaaag |
64 |
Q |
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| T |
34621468 |
aggagaagagagagatggcggaagcttgaagggagtgacactgaagaaggtagaaag |
34621524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 34748905 - 34748961
Alignment:
| Q |
8 |
aggagcagagagagatggcggaagcttgaagggagtgacactgaagaaggtagaaag |
64 |
Q |
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| T |
34748905 |
aggagaagagagagatggcggaagcttgaagggagtgacactgaagaaggtagaaag |
34748961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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