View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_7 (Length: 452)
Name: NF1589_low_7
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 49694387 - 49693959
Alignment:
| Q |
16 |
aatactacaacgattcaaagtattgcaactaatggaggtcaaagtgatgctgcttctcatcaagaatgcgagagtgagaaactggtaagcgtatcttact |
115 |
Q |
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| T |
49694387 |
aatactacaacgattcaaagtattgcaactaatggaggtcaaagtgatgttgcttctcatcaagaatgcgagagtgagaaactggtaagcgtaactgatt |
49694288 |
T |
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| Q |
116 |
atgtagatgactcaaaagatatgttgcatgattcttctgttggttttgaatccaatgatggtgtttctgaaggtaatgaaattcagggtgttgagtattc |
215 |
Q |
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| T |
49694287 |
atgtagacgactcaaaagatatgttgcatgattcttctgttggttttgaatccaatgatggtgtttctgaaggtaatgaaattcagggtgttgagtattc |
49694188 |
T |
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| Q |
216 |
tgaactttctgatcctgcactctttgaagagtgtaaatatttgaaaaatggtttgtctgaaactggtttagattttattctaaaagatgggttgttttgt |
315 |
Q |
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| T |
49694187 |
tgaactttctgatcctgcactctttgaagagtgtaaatatttgaaaaatggtttgtctgaaactggtttagattttattctaaaagatgggttgttttgt |
49694088 |
T |
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| Q |
316 |
gattaccattcacatgagaatgcggaaacgtttaactttggagacaatgtaaacgaagaggctactatggagctaaacacactaagtcaagagtcaaaaa |
415 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49694087 |
gattaccattcacacgagaatgcggaaacgtttaactttggagacaatgtaaacgaagaggctactatggagctaaacacagtaagtcaagagtcaaaaa |
49693988 |
T |
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| Q |
416 |
gagatagttcggatttggatgatgatgtc |
444 |
Q |
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| T |
49693987 |
gagatagttcggatttggatgaagatgtc |
49693959 |
T |
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