View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1589_low_8 (Length: 423)

Name: NF1589_low_8
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1589_low_8
NF1589_low_8
[»] chr5 (4 HSPs)
chr5 (1-403)||(32795350-32795746)
chr5 (136-403)||(19670583-19670849)
chr5 (239-346)||(32796346-32796453)
chr5 (220-318)||(26896578-26896676)
[»] chr6 (14 HSPs)
chr6 (143-400)||(11678756-11679008)
chr6 (220-403)||(2921875-2922062)
chr6 (201-403)||(27340619-27340822)
chr6 (201-403)||(27401359-27401562)
chr6 (221-326)||(13558009-13558114)
chr6 (201-323)||(2923172-2923295)
chr6 (201-302)||(13556018-13556119)
chr6 (220-311)||(16403529-16403619)
chr6 (147-308)||(11677130-11677290)
chr6 (217-284)||(22879999-22880066)
chr6 (220-314)||(16910129-16910223)
chr6 (298-345)||(11676986-11677033)
chr6 (217-284)||(22898114-22898181)
chr6 (220-330)||(14721695-14721804)
[»] scaffold0065 (1 HSPs)
scaffold0065 (136-380)||(34631-34873)
[»] chr1 (6 HSPs)
chr1 (201-401)||(22827041-22827245)
chr1 (201-326)||(22840959-22841084)
chr1 (201-301)||(22826646-22826746)
chr1 (144-256)||(20260903-20261014)
chr1 (136-186)||(26207059-26207109)
chr1 (220-308)||(24272755-24272843)
[»] chr7 (8 HSPs)
chr7 (201-334)||(11269939-11270072)
chr7 (201-326)||(7961767-7961892)
chr7 (136-246)||(11269753-11269862)
chr7 (201-256)||(36208004-36208059)
chr7 (259-329)||(1103145-1103215)
chr7 (146-246)||(11280342-11280442)
chr7 (292-341)||(40279382-40279430)
chr7 (226-310)||(1716668-1716752)
[»] chr3 (5 HSPs)
chr3 (143-334)||(25889606-25889789)
chr3 (201-330)||(30046404-30046534)
chr3 (201-312)||(37133785-37133896)
chr3 (289-341)||(25578998-25579051)
chr3 (237-310)||(31141410-31141483)
[»] chr4 (7 HSPs)
chr4 (201-314)||(27272573-27272687)
chr4 (146-334)||(50887366-50887545)
chr4 (201-330)||(53472556-53472683)
chr4 (207-330)||(53469673-53469796)
chr4 (220-307)||(10395972-10396059)
chr4 (220-312)||(32015167-32015259)
chr4 (220-330)||(29235155-29235265)
[»] chr2 (5 HSPs)
chr2 (201-330)||(8761186-8761316)
chr2 (223-330)||(37965516-37965624)
chr2 (233-321)||(10128496-10128584)
chr2 (265-326)||(15140798-15140859)
chr2 (220-304)||(25550091-25550174)
[»] scaffold0007 (1 HSPs)
scaffold0007 (235-308)||(260213-260286)
[»] chr8 (1 HSPs)
chr8 (220-276)||(42001908-42001964)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 32795350 - 32795746
Alignment:
Q  1 caaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaaaagggaataatctgtcaaactatttgtgttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32795350 caaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaagagggaataatctgtcaaactatttgtgttga 32795449  T
Q  101 aacatctgaactaaatgctagagttgagcataaactataaaaaa-cagaaagaaaggaattgtataatttaattaataattacatatttacatataatag 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||      |    
T  32795450 aacatctgaactaaatgctagagttgagcataaactataaaaaaacagaaagaaaggaattgtataatttaattaataattacatatt-acat------g 32795542  T
Q  200 gtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatat 299  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  32795543 atagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatat 32795642  T
Q  300 ttcttcatattatccaatgtgggacattttctcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaa 399  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32795643 ttcttcatattatccgatgtgggacattttctcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaa 32795742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 136 - 403
Target Start/End: Complemental strand, 19670849 - 19670583
Alignment:
Q  136 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 235  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||  || |||| |   |||||||||||||| ||| ||||||||||||||||    
T  19670849 tataagaaacagaaagaaaggaattgtataatgtaattaataattacagatc-acgtatactgaatagtagaggtaacgctagctatagcaaaacccact 19670751  T
Q  236 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 335  Q
    |||||||||| ||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  19670750 aactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatcttatgtgagacattttctcatt 19670651  T
Q  336 attattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcga 403  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  19670650 attattgatatcctcccgcaagttgtatggtctgaaagagagttgcaacttggacaataagtaatcga 19670583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 32796346 - 32796453
Alignment:
Q  239 tattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattatt 338  Q
    |||| ||||||| |||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacattttctcattatt 32796445  T
Q  339 attgatat 346  Q
    ||||||||    
T  32796446 attgatat 32796453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 318
Target Start/End: Complemental strand, 26896676 - 26896578
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 318  Q
    ||||||||||| || ||||||||  |||||| |||||  ||||||||    |||||| ||||| | ||| |||||||||||||||| |||| |||||||    
T  26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctccaatg 26896578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 143 - 400
Target Start/End: Complemental strand, 11679008 - 11678756
Alignment:
Q  143 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 242  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||| ||| ||| |   |||||||||||| | ||  |||||||||| ||||||    ||    
T  11679008 aacagaaagaaaggaattgaataatgtaattgataaatacatatt-acaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----tt 11678914  T
Q  243 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattg 342  Q
    ||||  || |||||  |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11678913 ggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacattttctcattattattg 11678814  T
Q  343 atatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaat 400  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  11678813 atatcctcccgcaagttgtatggtttgaaagagagatgcaacttggacaataagtaat 11678756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 220 - 403
Target Start/End: Original strand, 2921875 - 2922062
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 319  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| |||||||||||| |||| || ||| | ||||||||||||||||||||||| ||||    
T  2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattatccgatgt 2921974  T
Q  320 gggacat-tttctcattatta---ttgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcga 403  Q
    | |||||   ||| |||||||   |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2921975 gagacataaatctaattattattgttgatatcctcctgcaagttgtatggtctgaaagagagatgcaacttggacagtaagtaatcga 2922062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 403
Target Start/End: Original strand, 27340619 - 27340822
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27340619 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27340716  T
Q  301 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 396  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||| |||||| || ||| |||||||||||||||||||||||||    
T  27340717 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgcaa-ttgtatggtttgagagagagatgcaacttggacagtaag 27340815  T
Q  397 taatcga 403  Q
    || ||||    
T  27340816 tactcga 27340822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 403
Target Start/End: Original strand, 27401359 - 27401562
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27401359 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27401456  T
Q  301 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 396  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||| |||||| || ||| |||||||||||||||||||||||||    
T  27401457 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgcaa-ttgtatggtttgagagagagatgcaacttggacagtaag 27401555  T
Q  397 taatcga 403  Q
    || ||||    
T  27401556 tactcga 27401562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 13558009 - 13558114
Alignment:
Q  221 atagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtg 320  Q
    ||||||||| |||||||||||||||||| | |||||  ||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtg 13558108  T
Q  321 ggacat 326  Q
    ||||||    
T  13558109 ggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 2923172 - 2923295
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcc-tttgcatat 299  Q
    ||||||| ||||  |||| |||| ||| |||||||||||||| ||||||| | |||  |||||||||||||||||| ||||||| ||||| |||||||||    
T  2923172 tagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatat 2923271  T
Q  300 ttcttcatattatccaatgtggga 323  Q
    ||||||||||||||| ||||||||    
T  2923272 ttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 13556018 - 13556119
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    ||||||| |||| | ||| |||||||||||||| |||||||||||||||| |||||  ||||||||| |||||||| ||||||| |||||||||||||||    
T  13556018 tagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatt 13556117  T
Q  301 tc 302  Q
    ||    
T  13556118 tc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 16403619 - 16403529
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatta 311  Q
    |||||||||| ||||||| ||||||||||| |||||   |||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  16403619 tatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatta 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 308
Target Start/End: Complemental strand, 11677290 - 11677130
Alignment:
Q  147 gaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtg 246  Q
    ||||||||||||||| ||||| | |||||||| ||||   ||||| |||  |  |||||||||||| | ||| ||||| ||||||| |||||||||||||    
T  11677290 gaaagaaaggaattgaataatgtcattaataaatacaagattacaaatacgaa-tagtagaggtaatgctagctataggaaaacccgctaactattggtg 11677192  T
Q  247 caagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 308  Q
      || |||||  |||||||||| ||||||| ||||||  || ||||||||||||||||||||    
T  11677191 ttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 22879999 - 22880066
Alignment:
Q  217 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 284  Q
    ||||||||||||||||||||| |||||||||||| ||||   |||||||| || |||||| |||||||    
T  22879999 agttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgac 22880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 16910129 - 16910223
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatcc 314  Q
    ||||||||||| ||| ||||||||| ||||  |||||  |||||||| ||||||||| |||   | ||| ||||||||||| |||||||||||||    
T  16910129 tatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatcc 16910223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 11677033 - 11676986
Alignment:
Q  298 atttcttcatattatccaatgtgggacattttctcattattattgata 345  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  11677033 atttcttcatattatccgatgtgagacattttcaaattattattgata 11676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 22898114 - 22898181
Alignment:
Q  217 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 284  Q
    ||||||||||||||||||||| |||||||||||| ||||   ||||| || || |||||| |||||||    
T  22898114 agttatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgac 22898181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 14721804 - 14721695
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 319  Q
    |||| ||||||||| ||||||||| |||||| |||||  | | ||||| |||||||| ||| | | || | ||||||||||||||  |||| ||| ||||    
T  14721804 tataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttataggccaaatc-tttgcatatttctttctattctccgatgt 14721706  T
Q  320 gggacattttc 330  Q
    |||||||||||    
T  14721705 gggacattttc 14721695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 136 - 380
Target Start/End: Complemental strand, 34873 - 34631
Alignment:
Q  136 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 235  Q
    ||||| ||||||||||||| ||||||||||||  |||| |||||||||  |||||| ||| ||  ||||||| ||||  |||| ||||||||||||||||    
T  34873 tataagaaacagaaagaaatgaattgtataatgaaattgataattacaagtttacaaatactaaatagtagaagtaatattagctatagcaaaacccact 34774  T
Q  236 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 335  Q
    |||||||||||| | ||||||  |||||  ||||||||||| |||||||||||| ||| ||||||| || |||||||| |||||| ||||||||||||||    
T  34773 aactattggtgctaataatactaacaca--agacttttatttatatgactaagcattttcatatttttttatattatctaatgtgagacattttctcatt 34676  T
Q  336 attattgatatcctcccgcaagttgtattgtctgaaagagagatg 380  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  34675 attattgatatcctcccgcaagttgtatggtctgaaagagtgatg 34631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 201 - 401
Target Start/End: Original strand, 22827041 - 22827245
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||||   ||||||||| |||||||| ||||||| || ||||||||||||    
T  22827041 tagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatt 22827140  T
Q  301 tcttcatattatccaatgtgggacat-tttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 396  Q
    |||||||||||||| |||||||||||  |||   | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22827141 tcttcatattatccgatgtgggacataattctaattattattattgatatcctcccgcaagttgtatggtctgaaagagagatgcaacttggacaataag 22827240  T
Q  397 taatc 401  Q
    |||||    
T  22827241 taatc 22827245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 22841084 - 22840959
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    ||||||| |||| | ||| ||||| ||||||||||||||||||||||||| |||||  ||||||||| ||||||||  |||||| |||||||||||||||    
T  22841084 tagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatt 22840985  T
Q  301 tcttcatattatccaatgtgggacat 326  Q
    |||||||||||||| |||||||||||    
T  22840984 tcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 22826646 - 22826746
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    ||||||| |||| | ||| |||||||||| |||||||||||||||||||| |||||  ||||| ||| |||||||| ||||||| ||||||||||| |||    
T  22826646 tagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagatt 22826745  T
Q  301 t 301  Q
    |    
T  22826746 t 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 20260903 - 20261014
Alignment:
Q  144 acagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattg 243  Q
    ||||||||||| | |||||||||| ||||||||||||||| | ||||||||| |   |||||||||||||| ||||||||||||||  || || ||||||    
T  20260903 acagaaagaaatggattgtataatgtaattaataattacaga-ttacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattg 20261001  T
Q  244 gtgcaagtaatac 256  Q
     |||||| |||||    
T  20261002 atgcaagaaatac 20261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 26207059 - 26207109
Alignment:
Q  136 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatat 186  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  26207059 tataaagaatagaaagaaaggaattgtataatgtaattaataattacatat 26207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 24272843 - 24272755
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 308  Q
    ||||| ||||| ||||||||||||||||||| |||||  ||||||||| | |||||  ||||    ||| |||||||||||||||||||    
T  24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 201 - 334
Target Start/End: Complemental strand, 11270072 - 11269939
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||| ||||||| || | |||  |||||    
T  11270072 tagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatt 11269973  T
Q  301 tcttcatattatccaatgtgggacattttctcat 334  Q
    |||||||||||||| |||||||||||||||||||    
T  11269972 tcttcatattatccgatgtgggacattttctcat 11269939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 7961892 - 7961767
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| ||||||| || ||||||||||||    
T  7961892 tagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatt 7961793  T
Q  301 tcttcatattatccaatgtgggacat 326  Q
    |||||||||||| | |||||||||||    
T  7961792 tcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 11269753 - 11269862
Alignment:
Q  136 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 235  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||||| | ||||| ||| ||  |||||||||||||| ||| |||||||||||  |||    
T  11269753 tataaaaaatagaaagaaatgaattgtataatgtaattgataattacaga-ttacagatactaactagtagaggtaacgctagctatagcaaaacttact 11269851  T
Q  236 aactattggtg 246  Q
    |||||||||||    
T  11269852 aactattggtg 11269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 36208059 - 36208004
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaatac 256  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  36208059 tagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatac 36208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 1103215 - 1103145
Alignment:
Q  259 acacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacatttt 329  Q
    ||||||||| |||||||| ||||| | ||| |||| |||||||||||||||||||| ||||||||| ||||    
T  1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttt 1103145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 11280442 - 11280342
Alignment:
Q  146 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 245  Q
    |||||||||| ||||||||||| ||||| ||||||||| |||     ||| |   |||||||||||||| ||| |||||||||||| |||||||||||||    
T  11280442 agaaagaaagaaattgtataatgtaattgataattacagattacgggatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggt 11280343  T
Q  246 g 246  Q
    |    
T  11280342 g 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 40279430 - 40279382
Alignment:
Q  292 ttgcatatttcttcatattatccaatgtgggacattttctcattattatt 341  Q
    |||| |||||||||||| |||||||||||| ||||||||| |||||||||    
T  40279430 ttgcttatttcttcataatatccaatgtggaacattttct-attattatt 40279382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 1716668 - 1716752
Alignment:
Q  226 aaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 310  Q
    ||||| |||||||||||| |||||| ||||   ||||||||||| |||||| |||||   ||| |||| ||||||| ||||||||    
T  1716668 aaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatatt 1716752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 143 - 334
Target Start/End: Complemental strand, 25889789 - 25889606
Alignment:
Q  143 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 242  Q
    ||||||||||||||||||||||||| ||||| ||||        ||||| | | ||  || ||||||||  | ||| |||||||||||||||||||||||    
T  25889789 aacagaaagaaaggaattgtataatgtaattgataa--------ttacaaagactaaataatagaggtactgctagctatagcaaaacccactaactatt 25889698  T
Q  243 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 334  Q
    |||||||| |||||  ||| |||||||||||||| ||||||| || ||||||||||  ||||||| |||||| |||||||||||||||||||    
T  25889697 ggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatgtgggacattttctcat 25889606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 30046534 - 30046404
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcata-- 298  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || |||| |||||  ||||||||  |||||||| |||||   ||| |||||||||      
T  30046534 tagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatatt 30046436  T
Q  299 tttcttcatattatccaatgtgggacattttc 330  Q
    ||| |||||||||||| || || |||||||||    
T  30046435 ttttttcatattatccgatatgagacattttc 30046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 37133785 - 37133896
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    |||||||| |||| |||||||||||||||  |||||||||||| || ||| |||||  | |||||||||||||||| ||| | ||||  ||| | |||||    
T  37133785 tagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatatt 37133884  T
Q  301 tcttcatattat 312  Q
    | ||||||||||    
T  37133885 ttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 25578998 - 25579051
Alignment:
Q  289 cctttgcatatttcttcatattatccaatgtgggacatt-ttctcattattatt 341  Q
    |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||    
T  25578998 cctttgcatatttcttcatattatccgatgtgagacattattctaattattatt 25579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 31141483 - 31141410
Alignment:
Q  237 actattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 310  Q
    |||||||||| ||| |||||  |||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||    
T  31141483 actattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 31141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 27272687 - 27272573
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaa-cccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatat 299  Q
    ||||||| |||| | ||| |||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||| ||||||| || |||||||||||    
T  27272687 tagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatat 27272588  T
Q  300 ttcttcatattatcc 314  Q
    |||||||||||||||    
T  27272587 ttcttcatattatcc 27272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 146 - 334
Target Start/End: Original strand, 50887366 - 50887545
Alignment:
Q  146 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 245  Q
    |||||||||||||||||||||| ||||| ||||||||||||        | ||  ||||||||||||   ||| ||||||||||||||||||||||| ||    
T  50887366 agaaagaaaggaattgtataatgtaattgataattacatat--------actaaatagtagaggtaatactagctatagcaaaacccactaactattagt 50887457  T
Q  246 gcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 334  Q
    | ||| || ||| || |||||||| |||||| ||||| | |||||||||||||||| |||||||||| | ||| |||||||||||||||    
T  50887458 gtaagcaaaaccaacgcacaagacatttatttatatggccaagcctttgcatattt-ttcatattattcgatgcgggacattttctcat 50887545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 53472556 - 53472683
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 300  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||| | |||||  |||||||| ||||||||| ||||| | ||| |||||||||||    
T  53472556 tagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttttatttatatggc-aagtctttgcatatt 53472653  T
Q  301 tcttcatattatccaatgtgggacattttc 330  Q
    ||||| |||||||| |||||| ||||||||    
T  53472654 tcttcgtattatccgatgtggaacattttc 53472683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 53469673 - 53469796
Alignment:
Q  207 aggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttca 306  Q
    ||||||| || | ||||| |||| ||||||||||||| | |||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  53469673 aggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttca 53469772  T
Q  307 tattatccaatgtgggacattttc 330  Q
    |||||||  |||| | ||||||||    
T  53469773 tattatctgatgtagaacattttc 53469796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 10396059 - 10395972
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcat 307  Q
    ||||||| |||||||||||||||| |||||| |||||  ||||||||| |||||||| ||||| |  || ||||||||||||||||||    
T  10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcat 10395972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 32015259 - 32015167
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattat 312  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| || |||||| || |  | ||| |||||||||| ||||| ||||||    
T  32015259 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattat 32015167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 29235155 - 29235265
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaat-accgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 318  Q
    |||||||||||| || ||||||||||||||| ||| ||  ||||||||| | |||||| ||||| | ||| |||||||||||| ||||||| |||| |||    
T  29235155 tatagcaaaacc-acgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatataatccgatg 29235253  T
Q  319 tgggacattttc 330  Q
    ||||| ||||||    
T  29235254 tgggatattttc 29235265  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 8761186 - 8761316
Alignment:
Q  201 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatga-ctaagcctttgcatat 299  Q
    |||||||| ||| | ||| |||| ||||| |||||||| ||||||||||| |||||  |||||||||||||||||| |||||| | |||  |||||||||    
T  8761186 tagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatat 8761285  T
Q  300 ttcttcatattatccaatgtgggacattttc 330  Q
    ||||||||||||||  |||||||||||||||    
T  8761286 ttcttcatattatctgatgtgggacattttc 8761316  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 37965516 - 37965624
Alignment:
Q  223 agcaaaacccactaactattggtgcaagtaataccgacacacaa-gacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 321  Q
    ||||||||||| |||||||||||||||| |||||  |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||||||| |||||     
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtga 37965615  T
Q  322 gacattttc 330  Q
    |||||||||    
T  37965616 gacattttc 37965624  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 10128584 - 10128496
Alignment:
Q  233 actaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 321  Q
    |||||||||||||||||| |||||  |||||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| ||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtgg 10128496  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 15140859 - 15140798
Alignment:
Q  265 aagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacat 326  Q
    |||||||||||| ||||||| ||  |||| ||||||||||||| ||| || |||||||||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacat 15140798  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 25550174 - 25550091
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttctt 304  Q
    ||||| |||| |||||||||||| || |||| |||||  |||||||||||||||||| ||||| | ||  |||| ||||||||||    
T  25550174 tataggaaaatccactaactattagtccaagaaatact-acacacaagacttttatttatatggccaaatctttacatatttctt 25550091  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 260213 - 260286
Alignment:
Q  235 taactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 308  Q
    |||||||||||||||| |||||  |||||||||  ||||||| || |||||||| |||||||||||||||||||    
T  260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 42001964 - 42001908
Alignment:
Q  220 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttatt 276  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  42001964 tatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatt 42001908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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