View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_9 (Length: 422)
Name: NF1589_low_9
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 355
Target Start/End: Complemental strand, 35354167 - 35353845
Alignment:
| Q |
33 |
caaagacaaagacagagaataatatgttagtcaatatcaaaacattactatatgtttcaaaattcatgctaaatatatgaactataagcgacaaacaaaa |
132 |
Q |
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| T |
35354167 |
caaagacaaagacagagaataatatgttagtcaatatcaaaacattactatatgtttcaaaattcatgctaaatatatgaactataagcgacaaacaaaa |
35354068 |
T |
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| Q |
133 |
acttcatcaaaaaattaaagtaaatagnnnnnnngtcataaaaatatttttgtaa---tgacaaatgcagtatcatatttgagtaagtaaaagaaccttg |
229 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354067 |
actttatcaaaaaattaaagtaaatagttattttttcataaaaatatttttgtaaaaatgacaaatgcagtatcatatttgagtaagtaaaagaaccttg |
35353968 |
T |
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| Q |
230 |
aagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatgatattgatatcttagcatatggaaagc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
35353967 |
aagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatga---tgatatcatagcatatggaaagc |
35353871 |
T |
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| Q |
330 |
tctttatatagtgcttggatttgcaa |
355 |
Q |
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| T |
35353870 |
tctttatatagtgtttggatttgcaa |
35353845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 35377957 - 35377839
Alignment:
| Q |
220 |
aagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatgatattgatatcttagca |
319 |
Q |
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| T |
35377957 |
aagaaccttgaagctcccaagaggttcccaaggccagtttgtaaggatgcctggtttggaagccatattatgaatttgcga--atgatgatatcttagca |
35377860 |
T |
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| Q |
320 |
tat-ggaaagctctttatata |
339 |
Q |
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||| ||||||||||||||||| |
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| T |
35377859 |
tatgggaaagctctttatata |
35377839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 35369068 - 35368982
Alignment:
| Q |
217 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatga |
303 |
Q |
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| T |
35369068 |
taaaagaaccttgaaactcccaagaggtttccaaggccagtttgtaaggattcctggtttggaagccatattatgaatttgggatga |
35368982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 408
Target Start/End: Complemental strand, 35353826 - 35353791
Alignment:
| Q |
373 |
aaaggtcttggatttgcaaaattgttcacctaaaag |
408 |
Q |
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| T |
35353826 |
aaaggacttggatttgcaaaattgttcacctaaaag |
35353791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 19633552 - 19633643
Alignment:
| Q |
217 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatgatattg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||| |||| |
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| T |
19633552 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtttgtaaggatgcccggtttggaagccataatatgaatttgtgatgagattg |
19633643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 19682609 - 19682523
Alignment:
| Q |
217 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatga |
303 |
Q |
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||||| |||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||| || || |||||||||| |
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| T |
19682609 |
taaaacaaccttcaagctcccaagaggtttccaaggccagtttgtaaggatgcccgctttggaagccattgtaggaatttgtgatga |
19682523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 2259514 - 2259576
Alignment:
| Q |
223 |
aaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccat |
285 |
Q |
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||||||||| |||||||||||| |||| ||||| || ||||| ||||| |||||||| ||||| |
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| T |
2259514 |
aaccttgaatctcccaagaggtgtccatggccaatcagtaagtatgccaggtttggacgccat |
2259576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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