View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590-INSERTION-5 (Length: 343)
Name: NF1590-INSERTION-5
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590-INSERTION-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 2366544 - 2366209
Alignment:
| Q |
8 |
tcattcccttcagaagaatctctcaagtcttgtccaggcatggaatatcagtatatcttggaagttccacacttcctattcgtagtcacataatccc-ga |
106 |
Q |
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| T |
2366544 |
tcattcccttcagaagaatctctcaagtcttgtccaggcatggaatatcagcatatcttggaagttccacacttcctattcgtagtcacataatccccga |
2366445 |
T |
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| Q |
107 |
cttcattatggtttttctcaatggcattcttctttaagagttgccataatcaacaaccaaagataaatttgaattgacataatgaacaatcaaaggagta |
206 |
Q |
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| T |
2366444 |
cttcattatggtttttctcaacggcattcttctttaagagttgccataatcaacaaccaaagataaatttgaattgacataatgaacaatcaaaggagta |
2366345 |
T |
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| Q |
207 |
gtgaacttatattagagcatgcagaaaatatacctgtcctcctggagatraattatcgacaatagcgccaaccaaaggcttctgcagacctcttctttta |
306 |
Q |
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| T |
2366344 |
gt-aacttatattagagcatgcagaaaatatacatgtccccctggagataaattatcgacaatagcaccaaccaaaggcttctgcagacctcttctttta |
2366246 |
T |
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| Q |
307 |
taatgttttttcttgaaatgagggtctggatactgca |
343 |
Q |
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| T |
2366245 |
tgatgttttttcttgaaatgagggtctggatactgca |
2366209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 2362171 - 2362042
Alignment:
| Q |
214 |
tatattagagcatgcagaaaatatacctgtcctcctggagatraattatcgacaatagcgccaaccaaaggcttctgcagacctcttcttttataatgtt |
313 |
Q |
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| T |
2362171 |
tatattagagcatgcagaaaatatacctgtccccctggagataaattatctacaatagtgccaaccaaaggcttttgcaaaactcttcttttatgatatt |
2362072 |
T |
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| Q |
314 |
ttttcttgaaatgagggtctggatactgca |
343 |
Q |
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| T |
2362071 |
ttttctttaaatgagggtctggacactgca |
2362042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 222 - 343
Target Start/End: Complemental strand, 2354180 - 2354059
Alignment:
| Q |
222 |
agcatgcagaaaatatacctgtcctcctggagatraattatcgacaatagcgccaaccaaaggcttctgcagacctcttcttttataatgttttttcttg |
321 |
Q |
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| T |
2354180 |
agcatacagaaaatatacctgtcccccaggagataaattatctacaatagcaccaaccaaaggcttctgcaaaacccttctcttatgatgttttttcttg |
2354081 |
T |
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| Q |
322 |
aaatgagggtctggatactgca |
343 |
Q |
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| T |
2354080 |
aaatgagggtctggacactgca |
2354059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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