View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590-INSERTION-6 (Length: 764)

Name: NF1590-INSERTION-6
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590-INSERTION-6
NF1590-INSERTION-6
[»] chr2 (1 HSPs)
chr2 (16-764)||(29237098-29237855)


Alignment Details
Target: chr2 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 16 - 764
Target Start/End: Original strand, 29237098 - 29237855
Alignment:
Q  16 gtggaaatagctatagataccataacagtttcagatttctacaagctaaagcaacagtttcagactcatagtcttctaccactgctccccatttcaatct 115  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237098 gtggaaatagctatagataccgcaacagtttcagatttctacaagctaaagcaacagtttcagactcatagtcttctaccactgctccccatttcaatct 29237197  T
Q  116 atctatagaataaatcatttacttcaattccaggagtcttctaatctggttttggacagcttcgatcggatacacttagaagcaggacttgcgactagaa 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237198 atccatagaataaatcatttacttcaattccaggagtcttctaatctggttttggacagcttcgatcggatacacttagaagcaggacttgcgactagaa 29237297  T
Q  216 agtgtcttgtttagaggcaagactcttgtgagaactgatcttttaatgaatttagactaatttaaaatatagttcagcatacttcaggaaaaattactgc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  29237298 agtgtcttgtttagaggcaagactcttgtgagaactgatcttttaatgaatttagactaatttaaaatatagttcagtatactttaggaaaaattactgc 29237397  T
Q  316 cttggaaaagtaccggaaatacttcagaaaaaattgaagtgaacctaacatatctcgaaaaaacattatcaaaaactatatttgtagcttaaaccattgt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237398 cttggaaaagtaccggaaatacttcagaaaaaattgaagtgaacctaacatatctcgaaaaaacattatcaaaaactatatttgtagcttaaaccattgt 29237497  T
Q  416 gag--------aagagaaaacctccgataggnnnnnnnttgcagcttgctcaaagcacggcgaaattaacacatgtacattttaatataaacatgttgtg 507  Q
    |||        ||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237498 gagaataaccaaagagaaaatctccgataggaaaaaaattgcagcttgctcaaagcacggcgaaattaacacatgtacattttaatataaacatgttgtg 29237597  T
Q  508 tactcgtaacttactatttatgaacatgctatgaatgcataataacaagttgtccagcattccagattggaaatttaaagctttggtcannnnnnnnnng 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          |    
T  29237598 tactcgtaacttactatttatgaacatgctatgaatgcataataacaagttgtccagcattccagattggaaaattaaagctttggtcatttttttttgg 29237697  T
Q  608 gtcatttgatggcaaccttcagttcatccaaaataaaatgtacaaaaatcaacctacagtgttatctcaagtgttccaatagtcaatctattcagatcat 707  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237698 gtcatttgatggcaacgttcagttcatccaaaataaaatgtgcaaaaatcaacctacagtgttatctcaagtgttccaatagtcaatctattcagatcat 29237797  T
Q  708 tccctaatgtagcaactagtt-ccccacagaccacagtgtttatataatcaatctaca 764  Q
    ||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||    
T  29237798 tccctaatgtagcaactagttcccccacagaccacagtttttacataatcaacctaca 29237855  T

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