View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15900_high_3 (Length: 364)
Name: NF15900_high_3
Description: NF15900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15900_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 45382121 - 45382446
Alignment:
| Q |
19 |
ttactcgtattcaagttcaagtacagagatataacaaatggtaaacacatccatgagatgcttctagcccctaccttgcataattatacataattgtttg |
118 |
Q |
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| T |
45382121 |
ttactcgtattcaagttcaagtacagagatataacaaatggtaaacacatccatgag----------cccctaccttgcataattatacataattgttag |
45382210 |
T |
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| Q |
119 |
tgagttgtaaacacaaaacgataaatttgacaggggagaagaaattgaaatcgatacttgggtggatgcagcaggaaagaatggaatgcgaagagattgg |
218 |
Q |
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| T |
45382211 |
tgagttgtaaacacaaaacgataaatttgacaggggagaagaaattgaaatcgatacttgggtggatgcagcaggaaagaatggaatgcgaagagattgg |
45382310 |
T |
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| Q |
219 |
ataatccgagatcgttgtaccaaagagatcataactaaagcaacaaggtgcattatttcatatacttttttatgcatccaaaatatgttatgatttataa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382311 |
ataatccgagatcgttgtaccaaagagatcataactaaagcaacaaggtgcattatttcatatacttttttatgcatccaaaatatgttatgatttataa |
45382410 |
T |
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| Q |
319 |
taccaaataatatgttaataggaaactttgcctttg |
354 |
Q |
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| T |
45382411 |
taccaaataatatgttaataggaaactttgtctttg |
45382446 |
T |
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