View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15900_high_4 (Length: 356)
Name: NF15900_high_4
Description: NF15900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15900_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 2861601 - 2861939
Alignment:
| Q |
1 |
ttgttcgcggtgttcagctctctcagggactccagttcgccttctctgctattaaatatattcgctatcaacaagatttagcttctacttcagctaaaac |
100 |
Q |
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| T |
2861601 |
ttgttcgcggtgttcagctctctcagggactccagttcgccttctctgctattaaatatattcgctatcaacaagatttagcttctacttcagctaaaac |
2861700 |
T |
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| Q |
101 |
cgatacagtccgtccttggtttagtttggacggattggctattgctcttgttgccgttctgtttcttgtcctcaccactggtgctggtgaggacaaacat |
200 |
Q |
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| T |
2861701 |
cgatacagtccgtccttggtttagtttggacggattggctattgctcttgttgccgttctgtttcttgtcctcaccactggtgctggtgaggacaaacat |
2861800 |
T |
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| Q |
201 |
aattcagaacgacaacaacaacatggagaagaagaattagactctgttgttgttcggagaaataaaattaaccaaaggttgaagattttatcgatgatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2861801 |
aattcagaacgacaacaacaacatggagaagaagaattagactctgttgttgttcggagaaataaaattaaccaaaggttgaagattttatcgatgatac |
2861900 |
T |
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| Q |
301 |
cttcggctttgattgtgtttttgtttggattgttattgt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2861901 |
cttcggctttgattgtgtttttgtttggattgttattgt |
2861939 |
T |
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