View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15900_low_1 (Length: 516)
Name: NF15900_low_1
Description: NF15900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15900_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 2861944 - 2862455
Alignment:
| Q |
1 |
tattcgtgatccttcgatttttcatgatttgaaatttgggccgtcgaagattaagcttgtgagaattacatgggatgattttaaagttggatttgttaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2861944 |
tattcgtgatccttcgatttttcatgatttgaaatttgggccgtcgaagattaagcttgtgagaattacatgggatgattttaaagttggatttgttaga |
2862043 |
T |
|
| Q |
101 |
gctgcaattccacaaattcctttatccattttgaattcagtcattgcggtttgtaaactgtccggagatttatttccggacagagaagcttctgctatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2862044 |
gctgcaattccacaaattcctttatcgattttgaattcagtaattgcggtttgtaaactgtccggagatttatttcccgacagagaagcttctgctatga |
2862143 |
T |
|
| Q |
201 |
aggtttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2862144 |
aggtttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtt |
2862243 |
T |
|
| Q |
301 |
tggaggtaggagtggtgcttctgttgtttttcttggggttggtaaattgttgattgctttggtttttgggaactcttttggaagaattttgggtcagttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2862244 |
tggaggtaggagtggtgcttctgttgtttttcttggggttggtaaattgttgattgctttggtttttgggaactcttttggaagaattttgggtcagttt |
2862343 |
T |
|
| Q |
401 |
cctattggcatattaggggtgttgcttttgtttgctgggattgagttggctatggcttctaaagatatgaatagtaaacaagagtcttttattatgtttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2862344 |
cctattggcatattaggggtgttgcttttgtttgctgggattgaattggctatggcttctaaagatatgaatagtaaacaagagtcttttattatgtttg |
2862443 |
T |
|
| Q |
501 |
tctgtgctgctg |
512 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2862444 |
tttgtgctgctg |
2862455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 1875682 - 1875793
Alignment:
| Q |
204 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
303 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||| | || || ||||||| ||||| |
|
|
| T |
1875682 |
tttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttgg |
1875781 |
T |
|
| Q |
304 |
aggtaggagtgg |
315 |
Q |
| |
|
|| |||||||| |
|
|
| T |
1875782 |
tggaaggagtgg |
1875793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 1808078 - 1808189
Alignment:
| Q |
204 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
303 |
Q |
| |
|
||||||||| |||||| | |||||||| ||||||| ||||||||||||| |||| ||| ||||| ||||| ||| | || || ||||||| ||||| |
|
|
| T |
1808078 |
tttcagtgacagttggactaatgaatttagttggttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttgg |
1808177 |
T |
|
| Q |
304 |
aggtaggagtgg |
315 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1808178 |
aggaaggagtgg |
1808189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 49993100 - 49993022
Alignment:
| Q |
395 |
cagtttcctattggcatattaggggtgttgcttttgtttgctgggattgagttggctatggcttctaaagatatgaata |
473 |
Q |
| |
|
||||||||| | || || |||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||| |
|
|
| T |
49993100 |
cagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaata |
49993022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University