View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15900_low_2 (Length: 500)

Name: NF15900_low_2
Description: NF15900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15900_low_2
NF15900_low_2
[»] chr3 (2 HSPs)
chr3 (13-500)||(45382417-45382905)
chr3 (123-169)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (118-198)||(27661703-27661783)
chr6 (118-155)||(26650237-26650274)
chr6 (118-155)||(26756205-26756242)
chr6 (114-154)||(12627824-12627864)
chr6 (118-158)||(29449688-29449728)
chr6 (43-93)||(8148268-8148318)
chr6 (46-99)||(20809178-20809231)
chr6 (118-147)||(28783014-28783043)
chr6 (100-157)||(34057962-34058019)
chr6 (44-80)||(29670971-29671007)
chr6 (121-157)||(30537508-30537544)
chr6 (46-94)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (118-158)||(43160491-43160531)
chr7 (109-156)||(10893872-10893919)
chr7 (118-160)||(650524-650566)
chr7 (118-154)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (118-157)||(28136673-28136712)
chr5 (118-155)||(645342-645379)
chr5 (109-154)||(11601688-11601733)
chr5 (46-94)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (51-93)||(14229600-14229642)
chr8 (118-158)||(32691750-32691790)
chr8 (109-157)||(41686804-41686852)
chr8 (109-157)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (64-160)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (118-168)||(10164460-10164510)
chr4 (118-156)||(28890768-28890806)
chr4 (114-150)||(29388374-29388410)
chr4 (118-158)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (109-154)||(264615-264660)
chr1 (58-98)||(27835482-27835522)
chr1 (118-154)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 500
Target Start/End: Complemental strand, 45382905 - 45382417
Alignment:
Q  13 agcaaaggaagtgactaattggtaaataatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcacc 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45382905 agcaaaggaattgactaattggtaaataatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacacc 45382807  T
Q  113 aacat-----------atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatg 201  Q
    |||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  45382806 aacatgtcaccgacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatg 45382707  T
Q  202 tctctggtgttcatgtcagtgcttcatagataatgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagattg 301  Q
    |||||          |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382706 tctctc---------tcagtgcttcatagataacgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagattg 45382616  T
Q  302 tattctctcagcagtgtcatcagtgagcttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctct 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382615 tattctctcagcagtgtcatcagtgagcttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctct 45382516  T
Q  402 tttctaacttcttcaggtatctttgatagtcttcttgtttctctattcattatcacccatgtgctgtatcaaagacaaagtttcctattaacatattat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382515 tttctaacttcttcaggtatctttgatagtcttcttgtttctctattcattatcacccatgtgctgtatcaaagacaaagtttcctattaacatattat 45382417  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  123 attacattcaaatatgttattttcttaaattactactgatgttgacg 169  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 198  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattac 155  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattac 155  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  114 acatatgtgattacattcaaatatgttattttcttaaatta 154  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattactac 158  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  43 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 93  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  46 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 99  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  118 atgtgattacattcaaatatgttattttct 147  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  100 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 157  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  44 aactttgtagcacagacatttctgatcgaaggcatgt 80  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  121 tgattacattcaaatatgttattttcttaaattacta 157  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  46 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 94  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattactac 158  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  109 caccaacatatgtgattacattcaaatatgttattttcttaaattact 156  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattactactg 160  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaatta 154  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattacta 157  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattac 155  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  109 caccaacatatgtgattacattcaaatatgttattttcttaaatta 154  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  46 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 94  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  51 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 93  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattactac 158  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  109 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 157  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  109 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 157  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  64 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 160  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 168  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattact 156  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  114 acatatgtgattacattcaaatatgttattttcttaa 150  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaattactac 158  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  109 caccaacatatgtgattacattcaaatatgttattttcttaaatta 154  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  58 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 98  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  118 atgtgattacattcaaatatgttattttcttaaatta 154  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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