View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15900_low_3 (Length: 409)
Name: NF15900_low_3
Description: NF15900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15900_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 206 - 397
Target Start/End: Complemental strand, 28567272 - 28567081
Alignment:
| Q |
206 |
cagaaaattatatttgttgatatgaagatgaagaccatcatctgctacctcttcgcattaagttttttcctaattgtgacaggaagaaacatgtcatcaa |
305 |
Q |
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| T |
28567272 |
cagaaaattatatttgtcgatatgaagatgaagaccatcatctgctacctcttcgcattaagttttttcctaattgtgacaggaagaaacatgtcatcaa |
28567173 |
T |
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| Q |
306 |
ctactttgtctcttgacgtgaactttaatgatccaccacttcccttcttatacctcctccacctccatcccctcttgtgaacggtggtgatg |
397 |
Q |
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| T |
28567172 |
ctactttgtctcctgacgtgaattttaatgatccaccacttcccttcttatacctcctccacctccatcccctcttgtgaacggtggtgatg |
28567081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 206 - 394
Target Start/End: Complemental strand, 28547787 - 28547601
Alignment:
| Q |
206 |
cagaaaattatatttgttgatatgaagatgaagaccatcatctgctacctcttcgcattaagttttttcctaattgtgacaggaagaaacatgtcatcaa |
305 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
28547787 |
cagaaaatcatatttgttgatatgaagatgaagaccatcatctgctgcctcttcgcattaagttttttcgtaattgtgacaggaagaaacatgccatcaa |
28547688 |
T |
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| Q |
306 |
ctactttgtctcttgacgtgaactttaatgatccaccacttcccttcttatacctcctccacctccatcccctcttgtgaacggtggtg |
394 |
Q |
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| T |
28547687 |
ctgctttgtcttctgatgtgaaccttaatgatccaccacttcccttct--tacctcctccacctccatctcctcttgtgaacggtggtg |
28547601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 206 - 394
Target Start/End: Complemental strand, 28554571 - 28554388
Alignment:
| Q |
206 |
cagaaaattatatttgttgatatgaagatgaagaccatcatctgctacctcttcgcattaagttttttcctaattgtgacaggaagaaacatgtcatcaa |
305 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||| |
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| T |
28554571 |
cagaaaatcatatttgttgatatgaagatgaagaccatcatctgctgcctcttcgcattaagttttttcgtagttgtgacaggaagaaacatgccatcaa |
28554472 |
T |
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| Q |
306 |
ctactttgtctcttgacgtgaactttaatgatccaccacttcccttcttatacctcctccacctccatcccctcttgtgaacggtggtg |
394 |
Q |
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| T |
28554471 |
ctgctttgtcttatgacataaattttaatgatccaccacttcccttcata-----cctccacctccatctcctcttgtgaacggtggtg |
28554388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 28567460 - 28567363
Alignment:
| Q |
18 |
tgttcttcttcctctattgtatcgttgttgctgttcttttctacgtaaacaaaaaattacaccagtccctctatatttaatttatgatgttagctatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28567460 |
tgttcttcttcctctattgtatcgttgttgctgttcttttctacgtaaacaaaaaattacaccagtccctctatatttaatttatgatgttagctatc |
28567363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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