View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15900_low_6 (Length: 354)
Name: NF15900_low_6
Description: NF15900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15900_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 37697843 - 37697539
Alignment:
| Q |
18 |
ataattggatctgagtgtaatatccaataacacaaagaaaaactatgctatgctgcgtttgttgtacatgttacatgcaaaaaattaactaactagaaaa |
117 |
Q |
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| T |
37697843 |
ataattggatctgagtgtaatatccaataacacagagaaaaacta-----tgctgcgtttgttgtacatgttacatgcaa------aattaactagaaaa |
37697755 |
T |
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| Q |
118 |
gttaagagagtgagagagattgcttacagcccaaatacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttctggagga |
217 |
Q |
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| T |
37697754 |
gttaagagagtgagagagattgcttacagcccaaatacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttctggagga |
37697655 |
T |
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| Q |
218 |
taaacaggttcaatttctctaacaatgcaaccttgagaggtgagaatattcctatgttcttgaggaacatcaggtaatactgcaaccactagagggtaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |
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| T |
37697654 |
taaacaggttcaatttctctaacaatgcaaccttgagaggtgagaatattcctatgttcttgaggaacatcaggtaacactgcaaccactaaaggataca |
37697555 |
T |
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| Q |
318 |
tggttttgaccttacg |
333 |
Q |
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| T |
37697554 |
tggttttgactttacg |
37697539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 37687675 - 37687980
Alignment:
| Q |
18 |
ataattggatctgagtgtaatatccaataacacaaagaaaaactatgctatgctgcgtttgttgtacatgttacatgcaaaaaattaactaactagaaaa |
117 |
Q |
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| T |
37687675 |
ataattggatctgagtgtaatatccaataacacagagaaaaa-----ctatgctgcgtttgttgtacatgttacatgcaa------aattaactagaaaa |
37687763 |
T |
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| Q |
118 |
gttaagagagtgagagagattgcttacagcccaaatacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttc-tggagg |
216 |
Q |
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| T |
37687764 |
gttaagagagtgagagagattgcttacagcccaaatacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttcttggagg |
37687863 |
T |
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| Q |
217 |
ataaacaggttcaatttctctaacaatgcaaccttgagaggtgagaatattcctatgttcttgaggaacatcaggtaatactgcaaccactagagggtac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |
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| T |
37687864 |
ataaacaggttcaatttctctaacaatgcaaccttgagaggtgagaatattcctatgttcttgaggaacatcaggtaacactgcaaccactaaaggatac |
37687963 |
T |
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| Q |
317 |
atggttttgaccttacg |
333 |
Q |
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| T |
37687964 |
atggttttgactttacg |
37687980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 135 - 333
Target Start/End: Complemental strand, 55221600 - 55221402
Alignment:
| Q |
135 |
gattgcttacagcccaaatacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttctggaggataaacaggttcaatttc |
234 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||| || | ||||| ||||||||| |||| || |
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| T |
55221600 |
gattgcttacagcccaaatacgtagtttggagtagttgatgacataataagccatagcaaattgggtttgattcttaggagggtaaacaggtgcaatctc |
55221501 |
T |
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| Q |
235 |
tctaacaatgcaaccttgagaggtgagaatattcctatgttcttgaggaacatcaggtaatactgcaaccactagagggtacatggttttgaccttacg |
333 |
Q |
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|||||||||||||||||||| | |||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
55221500 |
tctaacaatgcaaccttgagcgatgagaatattcctatgttgctcaggaacatcaggcaacactgcaaccactagagggtacatggttttgaccttacg |
55221402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 325
Target Start/End: Original strand, 45945612 - 45945785
Alignment:
| Q |
152 |
atacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttctggaggataaacaggttcaatttctctaacaatgcaacctt |
251 |
Q |
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||||||| ||||||||| |||||||||||||| ||||| ||||| | |||||||| ||||||| || ||||| |||| || ||||||||||||||| |
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| T |
45945612 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggagcaatctccttaacaatgcaacctt |
45945711 |
T |
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| Q |
252 |
gagaggtgagaatattcctatgttcttgaggaacatcaggtaatactgcaaccactagagggtacatggttttg |
325 |
Q |
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| T |
45945712 |
gtgaaacaaggatcttacgatgttcttcaggaacatcaggtaagatagcaacaaccaaagggtacatggttttg |
45945785 |
T |
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