View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15900_low_8 (Length: 316)

Name: NF15900_low_8
Description: NF15900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15900_low_8
NF15900_low_8
[»] chr5 (2 HSPs)
chr5 (165-299)||(20322159-20322293)
chr5 (224-292)||(30997918-30997986)
[»] chr1 (2 HSPs)
chr1 (168-291)||(32610835-32610958)
chr1 (200-288)||(52779781-52779869)
[»] chr8 (1 HSPs)
chr8 (187-299)||(44231100-44231212)
[»] chr3 (3 HSPs)
chr3 (221-299)||(44666590-44666668)
chr3 (218-288)||(19584802-19584872)
chr3 (200-288)||(12298501-12298589)
[»] scaffold0329 (1 HSPs)
scaffold0329 (200-288)||(13110-13198)
[»] chr2 (1 HSPs)
chr2 (215-299)||(27034337-27034421)
[»] chr4 (2 HSPs)
chr4 (214-277)||(17131712-17131775)
chr4 (214-277)||(35089284-35089347)
[»] chr6 (2 HSPs)
chr6 (218-270)||(14618241-14618293)
chr6 (215-274)||(31962340-31962399)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 20322293 - 20322159
Alignment:
Q  165 ttgatactaggagatccatcagtggtcagtgtatcttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttc 264  Q
    ||||||||||||||||||| |||||||| ||| | ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  20322293 ttgatactaggagatccattagtggtcaatgttttttcttagggaattctctcatttcatggagaacaaagaaacaagtgactgtttctagatcttcttc 20322194  T
Q  265 tgaagttgagtatcgtgctttagcttcagcaactt 299  Q
    ||||| |||||| ||||||||||||||||||||||    
T  20322193 tgaagctgagtaccgtgctttagcttcagcaactt 20322159  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 30997986 - 30997918
Alignment:
Q  224 tggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttca 292  Q
    ||||| |||||||| ||| | |||||||| |||||||| ||||||||||||||||  ||| ||||||||    
T  30997986 tggaggacaaagaagcaaatcactgtttccaggtcctcatctgaagttgagtatcaggctctagcttca 30997918  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 32610958 - 32610835
Alignment:
Q  168 atactaggagatccatcagtggtcagtgtatcttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctga 267  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| | | | |||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  32610958 atactaggagatccatcagtggtcagtgtttcttcttagggaactctttaatttcatggagaacaaagaaacaagtgactatttctagatcctcttctga 32610859  T
Q  268 agttgagtatcgtgctttagcttc 291  Q
    || |||||||| |||| |||||||    
T  32610858 agctgagtatcatgctctagcttc 32610835  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 52779781 - 52779869
Alignment:
Q  200 ttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||  |||| ||| |||||||||||||||||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  52779781 ttcttaggcaattctcttatttcatggagaacaaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 52779869  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 44231100 - 44231212
Alignment:
Q  187 tggtcagtgtatcttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgcttta 286  Q
    |||||||||| ||||| |||  || | ||| ||||||||||||||||||||||||   ||||| ||||| || || ||||||| ||||||| | ||||||    
T  44231100 tggtcagtgtttcttcataggcaactctctgatttcatggagaacaaagaaacaaaccactgtgtctagatcttcctctgaagctgagtatagagcttta 44231199  T
Q  287 gcttcagcaactt 299  Q
    |||||||||||||    
T  44231200 gcttcagcaactt 44231212  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 44666668 - 44666590
Alignment:
Q  221 tcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaactt 299  Q
    ||||||||||||||||||||  ||||||| ||||| ||  | ||||||| |||||||||||||||||||||||| ||||    
T  44666668 tcatggagaacaaagaaacatataactgtatctagatcaccctctgaagctgagtatcgtgctttagcttcagccactt 44666590  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 19584872 - 19584802
Alignment:
Q  218 atttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||||||||||||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  19584872 atttcatggagaacaaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 19584802  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 12298501 - 12298589
Alignment:
Q  200 ttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||  |||| ||| |||||||||||||| ||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  12298501 ttcttaggcaattctcttatttcatggagaacgaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 12298589  T

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Target: scaffold0329 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 13110 - 13198
Alignment:
Q  200 ttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||  |||| ||| |||||||||||||||||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  13110 ttcttaggcaattctcttatttcatggagaacaaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 13198  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 27034421 - 27034337
Alignment:
Q  215 ctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaactt 299  Q
    ||||||||||||||||| |||||||||  |||||||||||| || ||| |||||| ||||||| | ||| | |||||||| ||||    
T  27034421 ctcatttcatggagaaccaagaaacaaacaactgtttctagatcatctcctgaagctgagtatagggctcttgcttcagccactt 27034337  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 17131712 - 17131775
Alignment:
Q  214 tctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtat 277  Q
    ||||||||||||||||||||||||||||   | |||||| |||||||| ||||||| |||||||    
T  17131712 tctcatttcatggagaacaaagaaacaacctattgtttccaggtcctcctctgaagctgagtat 17131775  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 35089284 - 35089347
Alignment:
Q  214 tctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtat 277  Q
    ||||||||||||| |||| |||||||||   ||||||||||| || |||||||||| |||||||    
T  35089284 tctcatttcatggcgaaccaagaaacaaaccactgtttctagatcatcttctgaagctgagtat 35089347  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 14618241 - 14618293
Alignment:
Q  218 atttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagt 270  Q
    |||||||||||||| ||||||||| ||| ||||||||| || |||||||||||    
T  14618241 atttcatggagaaccaagaaacaattaattgtttctagatcttcttctgaagt 14618293  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 31962340 - 31962399
Alignment:
Q  215 ctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgag 274  Q
    |||||||| |||||||| ||||||||| ||||||||||||| ||||| |  |||||||||    
T  31962340 ctcatttcttggagaactaagaaacaattaactgtttctagatcctcattagaagttgag 31962399  T

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