View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15901_high_2 (Length: 310)

Name: NF15901_high_2
Description: NF15901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15901_high_2
NF15901_high_2
[»] chr5 (1 HSPs)
chr5 (1-297)||(17975732-17976028)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 17975732 - 17976028
Alignment:
Q  1 tcttttgaatcaagatcctacataatatttttacaacaggaattgcttaaaagtttcttaaccatttcttaggaaatatcactattggagcaagttgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17975732 tcttttgaatcaagatcctacataatatttttacaacaggaattgcttaaaagtttcttaaccatttcttaggaaatatcactattggagcaagttgata 17975831  T
Q  101 ggcacatataaaaatcattgtcatataaacaacttattctaaactttaaaatcaatctgcttatataaagtatactgtacaaactgagacaacttatcgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17975832 ggcacatataaaaatcattgtcatataaacaacttattctaaactttaaaatcaatctgcttatataaagtatactgtacaaactgagacaacttatcgg 17975931  T
Q  201 acctatttcaccttcttaaataactgcatcataagtataatgtttctaaagtcattgaagctaatttaattgcacaataatgatgattaagaataat 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17975932 acctatttcaccttcttaaataactgcatcataagtataatgtttctaaagtcattgaagctaatttaattgcacaataatgatgattaagaataat 17976028  T

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