View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15901_low_1 (Length: 338)
Name: NF15901_low_1
Description: NF15901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15901_low_1 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0027 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 12431 - 12768
Alignment:
| Q |
1 |
gttgcaagaaaaattatagttgaagaaagacgattgaaaagtgaagataacacttgaccaaactaagtgtatctaaaaatatccctctctgtggaagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12431 |
gttgcaagaaaaattatagttgaagaaagacgattgaaaagtgaagataacacttgaccaaactaagtgtatgtaaaaatatccctctctgtggaagatg |
12530 |
T |
|
| Q |
101 |
gtgatattttctacaaatcaagaagtgtgtcctcatggcatttccgcgctaccatggcaaaggatgactattgctagagggttagtacatgtgcattgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
12531 |
gtgatattttctacaaatcaagaagtgtgtcctcacggcatttccgcgctaccatggcaaaggatgacaattgctagagggttagtatatgtgcattgat |
12630 |
T |
|
| Q |
201 |
ttaaactgataaaatgtatgccatgagattatgtcggttgtcgaatagcttcatgtcaacatggaagttgcaccataagttttcaacttgttttttgaca |
300 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | || |
|
|
| T |
12631 |
ttaaagtgataaaatgtatgctatgagattatgtcggttgtcgaagagcttcatgtcaacatggaagttgcatcataagttttcaacttgtttttcgtca |
12730 |
T |
|
| Q |
301 |
tgtacatgtcgaaaaatatgctgaaaatttaatggact |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12731 |
tgtacatgtcgaaaaatatgctgaaaatttaatggact |
12768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 18779480 - 18779437
Alignment:
| Q |
260 |
catggaagttgcaccataagttttcaacttgttttttgacatgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18779480 |
catggaagttgcaccataagttttcaacttgttttttgatatgt |
18779437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 31795651 - 31795592
Alignment:
| Q |
224 |
tgagattatgtcggttgtcgaatagcttcatgtcaacatggaagttgcaccataagtttt |
283 |
Q |
| |
|
||||||||| ||||| || ||| |||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
31795651 |
tgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcaccaaaagtttt |
31795592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 22189834 - 22189794
Alignment:
| Q |
247 |
agcttcatgtcaacatggaagttgcaccataagttttcaac |
287 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
22189834 |
agcttcctgtcaacatggaagttgctccttaagttttcaac |
22189794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 13953167 - 13953206
Alignment:
| Q |
257 |
caacatggaagttgcaccataagttttcaacttgtttttt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13953167 |
caacatggaagttgcaccataagttttcaacatgtttttt |
13953206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 21932320 - 21932265
Alignment:
| Q |
248 |
gcttcatgtcaacatggaagttgcaccataagttttcaacttgttttttgacatgt |
303 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
21932320 |
gcttcttgccaacatggaagttgcacaataagttttcaacttgaatttcgacatgt |
21932265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 4034203 - 4034164
Alignment:
| Q |
257 |
caacatggaagttgcaccataagttttcaacttgtttttt |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4034203 |
caacatggaagctgcaccataagttttcaacatgtttttt |
4034164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 1604761 - 1604715
Alignment:
| Q |
257 |
caacatggaagttgcaccataagttttcaacttgttttttgacatgt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
1604761 |
caacatggaagttgcaccataagttttcgactttctttttgatatgt |
1604715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 22172016 - 22172069
Alignment:
| Q |
249 |
cttcatgtcaacatggaagttgcaccataagttttcaacttgttttttgacatg |
302 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||| | |||| ||||||||||| |
|
|
| T |
22172016 |
cttcctgtcaacatgaaagttgcaccatatgtttttagcttgatttttgacatg |
22172069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University