View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15901_low_3 (Length: 231)
Name: NF15901_low_3
Description: NF15901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15901_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 6626886 - 6627092
Alignment:
| Q |
9 |
acatcatcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattcaatatgaagtatcnnnnnnncagttgttttgt |
108 |
Q |
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| T |
6626886 |
acatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattcaatatgaagtatctttttttcagttgttttgt |
6626985 |
T |
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| Q |
109 |
tgacagccataagaagtttcttttgtaaagaaacttgacctccattttgttgccaaaatgtcctgacgttttttagcaaactcttgtgttcaaaataggg |
208 |
Q |
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| T |
6626986 |
tgacagccataagaagtttcttttgtaaagaaacttgacctccattttgttgccaaaatgtcctgacgttttttagcaaactcttgtgttcaaaataggg |
6627085 |
T |
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| Q |
209 |
accaact |
215 |
Q |
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| T |
6627086 |
accaact |
6627092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 6811836 - 6811778
Alignment:
| Q |
9 |
acatcatcaagtataagaagtacacttttatgacggagtctttcttttaaaatcacttt |
67 |
Q |
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| T |
6811836 |
acatcgtcaagtacaagaagtacccttttatgtcgaaatctttcttttaaaatctcttt |
6811778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 6769426 - 6769386
Alignment:
| Q |
125 |
tttcttttgtaaagaaacttgacctccattttgttgccaaa |
165 |
Q |
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| T |
6769426 |
tttctcttgtaaagaaacttgacctccatttcgttcccaaa |
6769386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 6832348 - 6832300
Alignment:
| Q |
15 |
tcaagtataagaagtacacttttatgacggagtctttcttttaaaatca |
63 |
Q |
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| T |
6832348 |
tcaagtataagaagtacccttttatgtcgaagtttttcttttgaaatca |
6832300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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