View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15902_low_1 (Length: 433)
Name: NF15902_low_1
Description: NF15902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15902_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 41839087 - 41839303
Alignment:
| Q |
5 |
cagttacatccttcatttctagtagacagtgaaagcaacagtatcattgataaaagttttggactcaatgctgagctacaagctgatccacattcagatt |
104 |
Q |
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| T |
41839087 |
cagtcacatccttcatttccagtagacagtgaaagcaacagtaccattgataaaagttttggactcaatgctgagctacaagctgatccacattcagatt |
41839186 |
T |
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| Q |
105 |
cttcacttccatcagatactgaaagtagtattagctcaactattgatgaaagttttgagattgatataagaagaaatcaagacatgatgagtatatgtga |
204 |
Q |
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| T |
41839187 |
cttcacttccatcagatactgaaagtagtattagctcaactattgatgaaagttttgagattgatataagaagaaatcaagacatgatgagtatatgtga |
41839286 |
T |
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| Q |
205 |
caatctggactctaaca |
221 |
Q |
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| T |
41839287 |
caatctggactctaaca |
41839303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 279 - 433
Target Start/End: Original strand, 41839364 - 41839518
Alignment:
| Q |
279 |
gccttattgaaatcaagcttccaagcagccacttctctagtttaaatgaaaactctaaacagaatttagatttcattttcaagcagcagggtctcatgga |
378 |
Q |
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| T |
41839364 |
gccttattgaaatcaagcttccaagcagccacttctctagtttaaatgaaaactctaaacagaatttagatttcattttcaagcagcagggtctcatgga |
41839463 |
T |
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| Q |
379 |
tctcttagcagaaattaatgaaatgaatgaggatgaaaatttaattgagattgat |
433 |
Q |
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| T |
41839464 |
tctcttagcagaaattaatgaaatgaatgaggatgaaaatttaattgagattgat |
41839518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 23531373 - 23531454
Alignment:
| Q |
352 |
cattttcaagcagcagggtctcatggatctcttagcagaaattaatgaaatgaatgaggatgaaaatttaattgagattgat |
433 |
Q |
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| T |
23531373 |
cattttcaatcaacaaagtctcatgcagcttttagcagaaatgaatgatatgaatgaggatgaaaacttaattgagattgat |
23531454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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