View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15902_low_3 (Length: 280)
Name: NF15902_low_3
Description: NF15902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15902_low_3 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 29569157 - 29569427
Alignment:
| Q |
1 |
cttattcgactcagtttacactctggagatgtgcatgactgggttagacaaagagaaagcatcggttttctacaaagaacagtctagttcagcattcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569157 |
cttattcgactcagtttacactctggagatgtgcatgactgggttagacaaagagaaagcatcggttttctacaaagaacagtctagttcagcattcctg |
29569256 |
T |
|
| Q |
101 |
atgactgcgaattccggtatcagaaatattcttccggactctgaaataagtgattttgattttgacccgtgtggatattcaatgaattctgtagaaggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569257 |
atgactgcgaattccggtatcagaaatattcttccggactctgaaataagtgattttgattttgacccgtgtggatattcaatgaattctgtagaaggag |
29569356 |
T |
|
| Q |
201 |
ctgctgtttctacaattcatgttactccagaagacggtttcagttacgctagctttgaaacatgtgagtat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569357 |
ctgctgtttctacaattcatgttactccagaagacggtttcagttacgctagctttgaaacatgtgagtat |
29569427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 4691 - 4942
Alignment:
| Q |
7 |
cgactcagtttacactctggagatgtgcatgactgggttagacaaagagaaagcatcggttttctacaaagaacagtctagttcagcattcctgatgact |
106 |
Q |
| |
|
|||||| || ||||| || ||||||||||||||||| ||||||| ||||||||| |||||||||| |||||| || || |||||| | ||||||| |
|
|
| T |
4691 |
cgactctgtctacacactcgagatgtgcatgactggcttagacagagagaaagcttcggttttcttcaaagatcaatcagattcagctgccaagatgact |
4790 |
T |
|
| Q |
107 |
gcgaattccggtatcagaaatattcttccggactctgaaataagtgattttgattttgacccgtgtggatattcaatgaattctgtagaaggagctgctg |
206 |
Q |
| |
|
| ||| || || ||||| || |||||||| | ||||||||| |||| ||||||||||| || ||||| ||||||||||||||||| || || ||||||| |
|
|
| T |
4791 |
gtgaactctggcatcaggaaaattcttccaaattctgaaatatgtgactttgattttgaaccttgtggttattcaatgaattctgttgagggtgctgctg |
4890 |
T |
|
| Q |
207 |
tttctacaattcatgttactccagaagacggtttcagttacgctagctttga |
258 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| || |||||||| |
|
|
| T |
4891 |
tttctaccattcatgttactccagaagatgggttcagttatgcaagctttga |
4942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University