View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15903_high_1 (Length: 233)
Name: NF15903_high_1
Description: NF15903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15903_high_1 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: scaffold0172 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 8510 - 8301
Alignment:
| Q |
1 |
caatcgaattcgccttcattaggggataaaccaaatattgttaatgtgaagaatgaaacgaaacctatcgaacactctagtaaaggttattgtgaagatt |
100 |
Q |
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| T |
8510 |
caatcgaattcgccttcattaggggataaaccaaatattgttaatgtgaagaatgaaacgaaacctatcgaacactctagtaaaggttattgtgaagatt |
8411 |
T |
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| Q |
101 |
cagaggatgacgatgatgataaaccattgagttctaagtggaagatcaaatctaatcatgataagaaagttgtagcccctgttgttatcaagaaatcttc |
200 |
Q |
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| T |
8410 |
cagaggatgacgatgatgataaaccattgagttctaagtggaagatcaaatctaatcatgataacaaagttgtagctcctgttgttatcaagaaatcttc |
8311 |
T |
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| Q |
201 |
tcaagactcg |
210 |
Q |
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|||||||||| |
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| T |
8310 |
tcaagactcg |
8301 |
T |
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