View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15903_low_1 (Length: 299)

Name: NF15903_low_1
Description: NF15903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15903_low_1
NF15903_low_1
[»] chr7 (1 HSPs)
chr7 (13-299)||(27008119-27008402)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 27008119 - 27008402
Alignment:
Q  13 gattattctttacaaaggtcaaagtgtatcaatctagttaaaaccctgcttataggattaactgaaaaatgcaagtcannnnnnncaactacccttattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||    
T  27008119 gattattctttacaaaggtcaaagtgtatcaatctagttaaaaccctgcttataggattaactgaaaaatgcaagtcatttttttcaactagccttattt 27008218  T
Q  113 gattgggttggctcacgtgtcacacttctttgcagcaaccatgtattatgtggtagcatagctaatttaatcattcatcacaattcacagaaggcagaaa 212  Q
    |||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27008219 gatttggttggctcacgtgtcacacttctttgcagcaac---gtattatgtggtagcatagctaatttaatcattcatcacaattcacagaaggcagaaa 27008315  T
Q  213 ccataacataaatacttatatttaatattactttgcctaaaggttttttgaaactgttctggtttatattatgctttccatttggtc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27008316 ccataacataaatacttatatttaatattactttgcctaaaggttttttgaaactgttctggtttatattatgctttccatttggtc 27008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University