View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15904_high_2 (Length: 450)

Name: NF15904_high_2
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15904_high_2
NF15904_high_2
[»] chr8 (6 HSPs)
chr8 (1-431)||(15349475-15349905)
chr8 (3-73)||(4030191-4030261)
chr8 (3-53)||(12200921-12200971)
chr8 (3-53)||(12445349-12445399)
chr8 (3-36)||(12195906-12195939)
chr8 (3-36)||(12440334-12440367)
[»] chr4 (31 HSPs)
chr4 (1-272)||(48886832-48887101)
chr4 (1-272)||(48871146-48871415)
chr4 (1-272)||(48876450-48876719)
chr4 (269-431)||(48871450-48871625)
chr4 (269-431)||(48876754-48876929)
chr4 (269-431)||(48887136-48887311)
chr4 (3-160)||(7237065-7237222)
chr4 (3-73)||(45365623-45365693)
chr4 (4-73)||(45384293-45384362)
chr4 (3-55)||(7908884-7908936)
chr4 (3-164)||(37826304-37826466)
chr4 (332-393)||(37826067-37826128)
chr4 (4-73)||(48155826-48155895)
chr4 (4-159)||(48863848-48863999)
chr4 (3-55)||(7905160-7905212)
chr4 (97-164)||(48853347-48853412)
chr4 (87-133)||(50669757-50669801)
chr4 (3-73)||(7801225-7801295)
chr4 (3-73)||(7823557-7823627)
chr4 (1-55)||(45371492-45371546)
chr4 (344-422)||(48864921-48864998)
chr4 (360-398)||(49040266-49040304)
chr4 (3-44)||(7814065-7814106)
chr4 (3-76)||(48147113-48147186)
chr4 (4-37)||(48734859-48734892)
chr4 (3-55)||(7771977-7772029)
chr4 (120-160)||(7772095-7772135)
chr4 (3-55)||(7790662-7790714)
chr4 (120-160)||(7790780-7790820)
chr4 (348-396)||(7905441-7905489)
chr4 (272-332)||(49038054-49038113)
[»] chr5 (5 HSPs)
chr5 (2-164)||(29688713-29688876)
chr5 (6-118)||(9120354-9120472)
chr5 (349-413)||(9120676-9120740)
chr5 (69-164)||(29696896-29696989)
chr5 (201-273)||(29688873-29688946)
[»] chr1 (3 HSPs)
chr1 (339-396)||(24367996-24368053)
chr1 (1-73)||(24340997-24341069)
chr1 (1-73)||(24353362-24353434)
[»] chr3 (6 HSPs)
chr3 (200-267)||(11005184-11005251)
chr3 (201-267)||(11023754-11023820)
chr3 (2-37)||(11014933-11014968)
chr3 (2-53)||(47451323-47451374)
chr3 (376-421)||(11004985-11005030)
chr3 (1-37)||(11023945-11023981)
[»] chr2 (2 HSPs)
chr2 (11-73)||(29351018-29351080)
chr2 (120-164)||(29351122-29351166)
[»] chr7 (1 HSPs)
chr7 (4-32)||(30119715-30119743)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 15349475 - 15349905
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaagttttcagttattctccttcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15349475 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaggttttcagttattctccttcacc 15349574  T
Q  101 attttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349575 attttattgatatttataaaattatattgtattatgtactgttggatgactgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatttgt 15349674  T
Q  201 gggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaaaatgttgacaactttaattgtctgtgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349675 gggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaaaatgttgacaactttaattgtctgtgtg 15349774  T
Q  301 attcaaagttatttgtgaatgtgtaattggatatgttttggtcgctgtttgaaatcgttttatatggtaaattagtttgatgagtttttgcatgttaaac 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15349775 attcaacgttatttgtgaatgtgtaattggatatgttttggtcgctgtttgaaatcgttttatatggtaaattagtttgatgagtttttgcatattaaac 15349874  T
Q  401 gagatcaaaatcacaattacaccactttgac 431  Q
     ||||||||||||||||||||||||||||||    
T  15349875 aagatcaaaatcacaattacaccactttgac 15349905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 4030261 - 4030191
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    ||||| ||||||||||||||||||||||||||| | |||||||| |||||||| || ||| ||||||||||    
T  4030261 atgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 4030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 12200921 - 12200971
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 53  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12200921 atgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12200971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 12445349 - 12445399
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 53  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12445349 atgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12445399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 12195906 - 12195939
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtg 36  Q
    ||||||||||||||||||||||||||||||||||    
T  12195906 atgtatacagagtctctgctttcactccctggtg 12195939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 12440334 - 12440367
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtg 36  Q
    ||||||||||||||||||||||||||||||||||    
T  12440334 atgtatacagagtctctgctttcactccctggtg 12440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 48886832 - 48887101
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctccttc 97  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | ||||||||||||    
T  48886832 ctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttc 48886931  T
Q  98 accattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatt 197  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| |||||     
T  48886932 accattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccatttatgcata 48887026  T
Q  198 tgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaa 272  Q
    || |||||  ||||||||||||| ||||||| ||||||||||||| ||||||||||||||  |||||||||||||    
T  48887027 tgagggtatcatgtgtttgattgcatttgtaatatgattcagtataccgcatgagcttatttaatatgttatgaa 48887101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 48871146 - 48871415
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctccttc 97  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | ||||||||||||    
T  48871146 ctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttc 48871245  T
Q  98 accattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatt 197  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| |||||     
T  48871246 accattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccatttttgcata 48871340  T
Q  198 tgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaa 272  Q
    || |||||||| ||||||||||| ||||||| ||||||||||||| || |||| ||||||  |||||||||||||    
T  48871341 tgagggtaatacgtgtttgattgcatttgtaatatgattcagtataccacatgtgcttatttaatatgttatgaa 48871415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 48876450 - 48876719
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctccttc 97  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | ||||||||||||    
T  48876450 ctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttc 48876549  T
Q  98 accattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatt 197  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| |||||     
T  48876550 accattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccatttttgcata 48876644  T
Q  198 tgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaa 272  Q
    || |||||||| ||||||||||| ||||||| ||||||||||||| || |||| ||||||  |||||||||||||    
T  48876645 tgagggtaatacgtgtttgattgcatttgtaatatgattcagtataccacatgtgcttatttaatatgttatgaa 48876719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 431
Target Start/End: Original strand, 48871450 - 48871625
Alignment:
Q  269 tgaaaatgttgacaactttaattgtctgtgtgattcaaagttatttgtgaatgtgtaattggat-------------atgttttggtcgctgtttgaaat 355  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             ||||||||||| ||| |||||||    
T  48871450 tgaaaatgttgacaactttaattgtctgtgtgattcaatgttatttgtgaatgtgtaattggattgagctctaatgtatgttttggtcactgcttgaaat 48871549  T
Q  356 cgttttatatggtaaattagtttgatgagtttttgcatgttaaacgagatcaaaatcacaattacaccactttgac 431  Q
     |||||| |||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  48871550 tgttttacatggtaaattagtttgataaatttttgcatgttaaacaagatcaaaatcacaattacaccactttgac 48871625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 431
Target Start/End: Original strand, 48876754 - 48876929
Alignment:
Q  269 tgaaaatgttgacaactttaattgtctgtgtgattcaaagttatttgtgaatgtgtaattggat-------------atgttttggtcgctgtttgaaat 355  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             ||||||||||| ||| |||||||    
T  48876754 tgaaaatgttgacaactttaattgtctgtgtgattcaatgttatttgtgaatgtgtaattggattgagctctaatgtatgttttggtcactgcttgaaat 48876853  T
Q  356 cgttttatatggtaaattagtttgatgagtttttgcatgttaaacgagatcaaaatcacaattacaccactttgac 431  Q
     |||||| |||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  48876854 tgttttacatggtaaattagtttgataaatttttgcatgttaaacaagatcaaaatcacaattacaccactttgac 48876929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 431
Target Start/End: Original strand, 48887136 - 48887311
Alignment:
Q  269 tgaaaatgttgacaactttaattgtctgtgtgattcaaagttatttgtgaatgtgtaattggat-------------atgttttggtcgctgtttgaaat 355  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             ||||||||||| ||| |||||||    
T  48887136 tgaaaatgttgacaactttaattgtctgtgtgattcaatgttatttgtgaatgtgtaattggattgagctctaatgcatgttttggtcactgcttgaaat 48887235  T
Q  356 cgttttatatggtaaattagtttgatgagtttttgcatgttaaacgagatcaaaatcacaattacaccactttgac 431  Q
     |||||  |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  48887236 tgtttttcatggtaaattagtttgatgaattttagcatgttaaacaagatcaaaatcacaattacaccactttgac 48887311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 7237222 - 7237065
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaag---aatgaagttttcagttattctccttcac 99  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| | || ||| ||||||||   ||||| ||| | |  ||||||||||||     
T  7237222 atgtatacagagtctctgctttcactccttggtgacaatgagcatgcttaa-aagatgacacaaacaagaacaatgatgttgtgaaatattctccttcat 7237124  T
Q  100 cattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgta 160  Q
      |||| || ||||||||  ||||||||||| ||||||||| |||| ||| ||||||||||    
T  7237123 tgttttctttatatttat--aattatattgttttatgtactcttggttggttgcatttgta 7237065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 45365693 - 45365623
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    ||||||||||||||| |||| ||||| |||||||| |||||||| |||||||| || ||| ||||||||||    
T  45365693 atgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45365623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 45384362 - 45384293
Alignment:
Q  4 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    |||||||||||||||| ||||||||  ||||||| |||||||| |||||||| || ||| ||||||||||    
T  45384362 tgtatacagagtctctcctttcactttctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45384293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7908884 - 7908936
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 55  Q
    |||||||| |||||||||||||||||||||||||| |||||||| | ||||||    
T  7908884 atgtataccgagtctctgctttcactccctggtgacaatgagcaagtttaaga 7908936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 37826466 - 37826304
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctccttcac 99  Q
    |||||||| ||||||||||||||| |||||| |||    ||||| | |||||| || ||  ||||||||||   ||| ||||  |  |||||||||||||    
T  37826466 atgtatacggagtctctgctttcattccctgttgacggagagcaagtttaagaagatgatacaaacaagaagaatgaggtttcaaaatattctccttcac 37826367  T
Q  100 cattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 164  Q
    |||||| |||||||||  ||  ||||||||||||||| ||| |||| || ||| |||||||||||    
T  37826366 cattttcttgatattttcaa--ttatattgtattatgaactcttgggtgtctggatttgtagggt 37826304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 37826128 - 37826067
Alignment:
Q  332 tatgttttggtcgctgtttgaaatcgttttatatggtaaattagtttgatgagtttttgcat 393  Q
    |||||||| ||| |||| |||||| |||||||||||||||||| ||||||||| || |||||    
T  37826128 tatgtttttgtcactgtctgaaatggttttatatggtaaattaatttgatgaggttatgcat 37826067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 48155895 - 48155826
Alignment:
Q  4 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| || ||||| |||  | ||||||||||    
T  48155895 tgtatacagagtctttgctttcactccctggtgacaatgtgcaagcctaagaagacatcacaaacaagaa 48155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 48863848 - 48863999
Alignment:
Q  4 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaagttttcagttattctccttcaccatt 103  Q
    |||||||||||||||||||||||||||||  ||| | |||||| |||||||| || ||| | || ||  |||| ||||  |  |||||||||  ||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgacaccaagaatcatgaggttt--aaatattctcctggaccatt 48863945  T
Q  104 ttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgt 159  Q
    || | |||||||||  ||||||||||| ||||| ||  || | |||||||||||||    
T  48863946 ttctggatatttat--aattatattgttttatgaaccattcggtggctgcatttgt 48863999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7905160 - 7905212
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 55  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| | ||||||    
T  7905160 atgtatacggagtctctgctttcactccccggtgataacgagcaagtttaaga 7905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 48853347 - 48853412
Alignment:
Q  97 caccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 164  Q
    |||||||||||||||  ||||||   |||||||||||||||||| |||||| ||||||||| ||||||    
T  48853347 caccattttattgattattataac--tatattgtattatgtacttttggatagctgcatttttagggt 48853412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 50669757 - 50669801
Alignment:
Q  87 tattctccttcaccattttattgatatttataaaattatattgtatt 133  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||    
T  50669757 tattctccttcaccattttatttatatttat--aattatattgtatt 50669801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 7801225 - 7801295
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7801225 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 7823557 - 7823627
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7823557 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45371546 - 45371492
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 55  Q
    ||||||||||||||||||||||||||||| || | || ||||| || ||||||||    
T  45371546 ctatgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaaga 45371492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 48864921 - 48864998
Alignment:
Q  344 gctgtttgaaatcgttttatatggtaaattagtttgatgagtttttgcatgttaaacgagatcaaaatcacaattacac 422  Q
    |||| ||||||| ||||||||| |||| ||| |||| ||| | |||||||||| | | |||||||||||||||||||||    
T  48864921 gctgcttgaaattgttttatattgtaattta-tttgctgaatgtttgcatgttgatcaagatcaaaatcacaattacac 48864998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 49040304 - 49040266
Alignment:
Q  360 ttatatggtaaattagtttgatgagtttttgcatgttaa 398  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  49040304 ttatatggtaaattagtctgatgagtttatgcatgttaa 49040266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 7814065 - 7814106
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgag 44  Q
    |||||||| ||||||||||||||||||||||| || ||||||    
T  7814065 atgtataccgagtctctgctttcactccctggggacaatgag 7814106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 48147186 - 48147113
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatga 76  Q
    |||||||| ||||||||||||||||||||| |||| |||| ||   | ||||| || ||| |||||||||||||    
T  48147186 atgtatactgagtctctgctttcactccctagtgacaatgtgctaccctaagaagatgacacaaacaagaatga 48147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 48734892 - 48734859
Alignment:
Q  4 tgtatacagagtctctgctttcactccctggtga 37  Q
    |||||||||||||||||||||||||||| |||||    
T  48734892 tgtatacagagtctctgctttcactccccggtga 48734859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7771977 - 7772029
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 55  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7771977 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7772029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 7772095 - 7772135
Alignment:
Q  120 aattatattgtattatgtactgttggatggctgcatttgta 160  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  7772095 aattatattgttttatgtactcttgggtggctgcatttgta 7772135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7790662 - 7790714
Alignment:
Q  3 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 55  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7790662 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7790714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 7790780 - 7790820
Alignment:
Q  120 aattatattgtattatgtactgttggatggctgcatttgta 160  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  7790780 aattatattgttttatgtactcttgggtggctgcatttgta 7790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 7905441 - 7905489
Alignment:
Q  348 tttgaaatcgttttatatggtaaattagtttgatgagtttttgcatgtt 396  Q
    |||||||| |||||||||||||||||| | ||||| |||| ||||||||    
T  7905441 tttgaaatagttttatatggtaaattaatctgatgggtttatgcatgtt 7905489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 49038113 - 49038054
Alignment:
Q  272 aaatgttgacaactttaattgtctgtgtgattcaaagttatttgtgaatgtgtaattggat 332  Q
    |||||||||||||||||||||| ||||||| |  | ||||||| || ||||||||||||||    
T  49038113 aaatgttgacaactttaattgtttgtgtga-tatatgttatttatgcatgtgtaattggat 49038054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 29688713 - 29688876
Alignment:
Q  2 tatgtatacagagtctctgctttcactccctggtgataa---tgagcaggcttaagaggacgacgcaaacaagaatgaagttttcagttattctccttca 98  Q
    |||||||||||| |||||||||||||| ||||||| | |   ||| ||||||||||| || |||||| |||||||||| |||||||  ||||| ||||||    
T  29688713 tatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatgacgcagacaagaatgaggttttcaagtattccccttca 29688812  T
Q  99 ccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 164  Q
    |||||||  |||| |||||  |||||||| |||||||||||| |||  |||||||||| |||||||    
T  29688813 ccattttcatgatctttat--aattatatagtattatgtactcttgagtggctgcattcgtagggt 29688876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 9120354 - 9120472
Alignment:
Q  6 tatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaac------aagaatgaagttttcagttattctccttcac 99  Q
    |||||||||||||||||||||||||||||||| ||||| || |||||||  || ||| |||||      |||||||| ||||| |  |||||||||||||    
T  9120354 tatacagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgacacaaacaagaagaagaatgaggttttgaaatattctccttcac 9120453  T
Q  100 cattttattgatatttata 118  Q
    |||||| ||||| ||||||    
T  9120454 cattttcttgatttttata 9120472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 9120676 - 9120740
Alignment:
Q  349 ttgaaatcgttttatatggtaaattagtttgatgagtttttgcatgttaaacgagatcaaaatca 413  Q
    ||||||| ||||||| |||||||||||| | |||||||| ||||||| || | ||||||||||||    
T  9120676 ttgaaattgttttatttggtaaattagtctcatgagtttatgcatgtcaatcaagatcaaaatca 9120740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 29696896 - 29696989
Alignment:
Q  69 aagaatgaagttttcagttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 164  Q
    |||||||| ||||| |  |||||| ||||||||||||  |||| |||||||  ||||||||||||||| ||| |||  | ||||||||||||||||    
T  29696896 aagaatgaggttttgaagtattcttcttcaccattttcatgatctttataa--ttatattgtattatggactcttgagtagctgcatttgtagggt 29696989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 29688873 - 29688946
Alignment:
Q  201 gggtaatatgtgtttgattgaatttgtagtatgattc-agtatgccgcatgagcttatgcaatatgttatgaaa 273  Q
    |||||||||||||||||||| ||||||| |||||| | |||||| |  ||||||| ||| ||||||| ||||||    
T  29688873 gggtaatatgtgtttgattgcatttgtaatatgatccaagtatggcaaatgagctgatgaaatatgtcatgaaa 29688946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 24367996 - 24368053
Alignment:
Q  339 tggtcgctgtttgaaatcgttttatatggtaaattagtttgatgagtttttgcatgtt 396  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  24367996 tggtcactatttgaaattgttttatatggtaaattagtttgatgagtttatccatgtt 24368053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24340997 - 24341069
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    |||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24340997 ctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24341069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24353362 - 24353434
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    |||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24353362 ctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24353434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 11005251 - 11005184
Alignment:
Q  200 tgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgtt 267  Q
    ||||||||||||||| |||||  |||||| |||||| ||||||||| |||||||| ||| ||||||||    
T  11005251 tgggtaatatgtgttcgattgtgtttgtaatatgatccagtatgccacatgagctaatgtaatatgtt 11005184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 11023820 - 11023754
Alignment:
Q  201 gggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgtt 267  Q
    ||||||||||||||||||||  |||||| |||||| ||||||||| |||||||| ||| | ||||||    
T  11023820 gggtaatatgtgtttgattgtgtttgtaatatgatccagtatgccacatgagctaatgtactatgtt 11023754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 11014968 - 11014933
Alignment:
Q  2 tatgtatacagagtctctgctttcactccctggtga 37  Q
    |||||| |||||||||||||||||||||||||||||    
T  11014968 tatgtacacagagtctctgctttcactccctggtga 11014933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 47451374 - 47451323
Alignment:
Q  2 tatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 53  Q
    |||||| |||||||||||||||||||| || ||||| |||||||| ||||||    
T  47451374 tatgtacacagagtctctgctttcacttcccggtgacaatgagcaagcttaa 47451323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 11005030 - 11004985
Alignment:
Q  376 tttgatgagtttttgcatgttaaacgagatcaaaatcacaattaca 421  Q
    ||||||||||||||||||||| | | |||||||||||| |||||||    
T  11005030 tttgatgagtttttgcatgttgatcaagatcaaaatcataattaca 11004985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11023981 - 11023945
Alignment:
Q  1 ctatgtatacagagtctctgctttcactccctggtga 37  Q
    |||||||||||||||| |||||||||||||| |||||    
T  11023981 ctatgtatacagagtccctgctttcactccccggtga 11023945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 29351018 - 29351080
Alignment:
Q  11 agagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 73  Q
    ||||||| ||||||||||||| ||||| |||||||| |||||||| || ||| ||||||||||    
T  29351018 agagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgactcaaacaagaa 29351080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 29351122 - 29351166
Alignment:
Q  120 aattatattgtattatgtactgttggatggctgcatttgtagggt 164  Q
    ||||||||||||||||| ||| |||| ||| ||||||||||||||    
T  29351122 aattatattgtattatgaactcttgggtggttgcatttgtagggt 29351166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 30119743 - 30119715
Alignment:
Q  4 tgtatacagagtctctgctttcactccct 32  Q
    |||||||||||||||||||||||||||||    
T  30119743 tgtatacagagtctctgctttcactccct 30119715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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