View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15904_high_3 (Length: 326)

Name: NF15904_high_3
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15904_high_3
NF15904_high_3
[»] chr2 (12 HSPs)
chr2 (20-326)||(8405581-8405890)
chr2 (20-326)||(8395682-8395991)
chr2 (18-326)||(8375999-8376307)
chr2 (18-326)||(8411699-8412007)
chr2 (18-326)||(8433797-8434105)
chr2 (18-326)||(8416783-8417088)
chr2 (20-326)||(8430852-8431146)
chr2 (169-262)||(8368101-8368194)
chr2 (169-262)||(8401216-8401309)
chr2 (169-262)||(8422793-8422886)
chr2 (57-132)||(8403662-8403737)
chr2 (186-236)||(8403791-8403841)
[»] scaffold1738 (1 HSPs)
scaffold1738 (18-156)||(1-139)
[»] chr4 (3 HSPs)
chr4 (18-262)||(55330506-55330750)
chr4 (186-250)||(55336106-55336170)
chr4 (28-131)||(55335948-55336051)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 8405581 - 8405890
Alignment:
Q  20 aagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttctc 119  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  8405581 aagaagctgattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctc 8405680  T
Q  120 taaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8405681 taaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaaaaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtcca 8405780  T
Q  220 ccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaact---attgcctataaaagtagatccaatag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||| |||||||||||||    
T  8405781 ccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattgccaataaatgtagatccaatag 8405880  T
Q  317 ctgcaattcc 326  Q
    ||||||||||    
T  8405881 ctgcaattcc 8405890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 8395991 - 8395682
Alignment:
Q  20 aagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttctc 119  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  8395991 aagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctc 8395892  T
Q  120 taaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  8395891 taaatctttctctcccaaagttgattcaattgaagtttctatcaagttgaataaaccatcagaagctctatacatttcaaaaaccatgccaatttgtcca 8395792  T
Q  220 ccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaact---attgcctataaaagtagatccaatag 316  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||| |||||||||||||    
T  8395791 ccatgttcaaaagtatttattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattgccaataaatgtagatccaatag 8395692  T
Q  317 ctgcaattcc 326  Q
    ||||||||||    
T  8395691 ctgcaattcc 8395682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 8376307 - 8375999
Alignment:
Q  18 acaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttc 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8376307 acaagaagctgattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttc 8376208  T
Q  118 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtc 217  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8376207 tctaaatctttctctcccaaagttgaatcaattgaagtttctatcaagttgaagaaaccaccagaagctctatacatttcaaaaaccatgccaacttgtc 8376108  T
Q  218 caccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactattgcctataaaagtagatccaatagc 317  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||| | | |||| ||| || |||||||||||    
T  8376107 caccatgctcaaaagtattaattacagaagccaatgaaccagccaaaagaggaacaaaagcagccaaagaaccactacctacaaatgtcgatccaatagc 8376008  T
Q  318 tgcaattcc 326  Q
    |||||||||    
T  8376007 tgcaattcc 8375999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 8411699 - 8412007
Alignment:
Q  18 acaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttc 117  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||    
T  8411699 acaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttc 8411798  T
Q  118 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8411799 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaaaaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtc 8411898  T
Q  218 caccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactattgcctataaaagtagatccaatagc 317  Q
    ||||||| ||||||||||| |  ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||    
T  8411899 caccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagccaaagaactattgcctacaaatgtagatccaattgc 8411998  T
Q  318 tgcaattcc 326  Q
    |||||||||    
T  8411999 tgcaattcc 8412007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 8433797 - 8434105
Alignment:
Q  18 acaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttc 117  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||    
T  8433797 acaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttc 8433896  T
Q  118 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8433897 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaaaaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtc 8433996  T
Q  218 caccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactattgcctataaaagtagatccaatagc 317  Q
    ||||||| ||||||||||| |  ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||    
T  8433997 caccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagccaaagaactattgcctacaaatgtagatccaattgc 8434096  T
Q  318 tgcaattcc 326  Q
    |||||||||    
T  8434097 tgcaattcc 8434105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 8416783 - 8417088
Alignment:
Q  18 acaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttc 117  Q
    ||||||||||||||||| || | |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8416783 acaagaagctgattttgtggcacgttccctcagctctgatacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttc 8416882  T
Q  118 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||    
T  8416883 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaa-aaaccaccagaagctc--tacatttcaaaaaccatgccaacttgtc 8416979  T
Q  218 caccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactattgcctataaaagtagatccaatagc 317  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||| ||||||||||||||    
T  8416980 caccatgctcaaaagtattaactgcagaagccaatgaaccagccaatagaggaacaaaggcagccaaagagccattgcctataaatgtagatccaatagc 8417079  T
Q  318 tgcaattcc 326  Q
     ||||||||    
T  8417080 ggcaattcc 8417088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 8430852 - 8431146
Alignment:
Q  20 aagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttctc 119  Q
    |||||||||||||||| | ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8430852 aagaagctgattttgatgcaagttcccttagctctgatacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctc 8430951  T
Q  120 taaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8430952 taaatctttctctcccaaagttgattcaattgaagtttctatcaagttgaaaaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtcca 8431051  T
Q  220 ccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactattgcctataaaagtagatccaatagctg 319  Q
    ||||| ||||||||||| ||| |||||||||||            ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||    
T  8431052 ccatgctcaaaagtattaattacagaagccaat------------agaggaacaaaagcagccaaagaactattgccaataaatgtagatcctatagctg 8431139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 8368101 - 8368194
Alignment:
Q  169 aagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagcca 262  Q
    ||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||| |  |||| ||||||||  |||||||    
T  8368101 aagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca 8368194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 8401309 - 8401216
Alignment:
Q  169 aagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagcca 262  Q
    ||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||| |  |||| ||||||||  |||||||    
T  8401309 aagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca 8401216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 8422886 - 8422793
Alignment:
Q  169 aagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagcca 262  Q
    ||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||| |  |||| ||||||||  |||||||    
T  8422886 aagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca 8422793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 8403662 - 8403737
Alignment:
Q  57 tacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 132  Q
    ||||||||||||||| ||||| || |||||||| ||||| | |||  ||||||||||||| |  ||||||||||||    
T  8403662 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattcaaatctttctct 8403737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 8403791 - 8403841
Alignment:
Q  186 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtatt 236  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||    
T  8403791 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtatt 8403841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 139 - 1
Alignment:
Q  18 acaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttc 117  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  139 acaagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttc 40  T
Q  118 tctaaatctttctctcccaaagttgattcaattgaagtt 156  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39 tctaaatctttctctcccaaagttgattcaattgaagtt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 55330506 - 55330750
Alignment:
Q  18 acaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttc 117  Q
    ||||||| |||||||||| | ||| || |||| ||| || ||| |||||||||||  ||||||||| ||||||||||||| |||||||||||||||  ||    
T  55330506 acaagaacctgattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatc 55330605  T
Q  118 tctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaagaaaccagcagaagctctatacatttcaaaaaccatgccaacttgtc 217  Q
    || |||||||||||| |||| |||   ||||  |    ||| ||||  || | ||| ||| || ||  ||||||||||||||| ||||| |||| |||||    
T  55330606 tcaaaatctttctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtc 55330705  T
Q  218 caccatgttcaaaagtattgattgcagaagccaatgaaccagcca 262  Q
    ||||||||||||||| ||| | | ||| | | |||||||||||||    
T  55330706 caccatgttcaaaagcattcactacagcacctaatgaaccagcca 55330750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 55336106 - 55336170
Alignment:
Q  186 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagcca 250  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||||||  |||||||||| ||||||    
T  55336106 tctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagcca 55336170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 55335948 - 55336051
Alignment:
Q  28 gattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctt 127  Q
    |||||||| | |||||  || ||||| || ||||||||||| |||  ||| ||||| ||||||||||||| ||| |||||||||||||| || |||||||    
T  55335948 gattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctt 55336047  T
Q  128 tctc 131  Q
    ||||    
T  55336048 tctc 55336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University