View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15904_low_1 (Length: 948)
Name: NF15904_low_1
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15904_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 364 - 914
Target Start/End: Original strand, 16297628 - 16298180
Alignment:
| Q |
364 |
tgacgatatttcctcggttgatgcgaattcaaataaggatgaaagaattttggataattgtggcattattccaaacaattgtttgccatgtcttgcatct |
463 |
Q |
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| T |
16297628 |
tgacgatatttcctcggttgatgcgaattcaaataaggatgaaggaattttggataattgtggcattattccaaacaattgtttgccatgtcttgcatct |
16297727 |
T |
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| Q |
464 |
accattccttctcttgaaaaaagaagatcatgttcaagtcctcctaattcaaagaagaaggctcctccgaaactttctagtcgatgtaagttcgaatacn |
563 |
Q |
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| T |
16297728 |
accattccttctcttgaaaaaagaagatcatgttcaagtcctcctaattcaaagaagaaggctcctccgaaactttctagtcgatgtaagttcgaatact |
16297827 |
T |
|
| Q |
564 |
nnnnnncatatatagtgtggaatcgctgtttttctaggagtatgcatcttgcgttgcagttgtgtgtaaacgtaaatattctaactcttcattttgcttc |
663 |
Q |
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| T |
16297828 |
ttttt-catatatagtgtggaatcgctgtttttttgggagtatgcatcttgcgttgcagttgtgtgtaaacgtaaatattctaattcttctttttgtttc |
16297926 |
T |
|
| Q |
664 |
attttatggttttcagtttcttcaaagacactacaaagaccaattgcaggttctcaagtacccttctgtccaattgacaagaaaatgcttgattgttggt |
763 |
Q |
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| T |
16297927 |
attttatggttttcagtttcttcaaagacactacaaagaccaattgcaggttctcaagtacccttttgtcctattgacaagaaaatgcttgattgttggt |
16298026 |
T |
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| Q |
764 |
cacacattgagccaggaactttcaaagtccgaagcgtaaattatttcaagtaagatttagattctgtctgtaatttgtatttttacgagtagaaattgaa |
863 |
Q |
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| T |
16298027 |
cacacattgagccaggaactttcaaagtccgaagcgtaaattatttcaagtaagatttagattctgtttgtaatttgtgtttttacgggtagaaattgaa |
16298126 |
T |
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| Q |
864 |
ctcggtatctcagaatttacaacactcgcatac---aatgtgcaccgaccactc |
914 |
Q |
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| T |
16298127 |
ctcggtatctcagagtttacaacactcgcatacattaatgtgcaccgaccactc |
16298180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 40397266 - 40397600
Alignment:
| Q |
19 |
atagggttggtgtgatttgatattgtatgtatatgtacaacgtaataggtccaatcaaacataaaactttagcaaaatattcaaattcctcccttgcttc |
118 |
Q |
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| T |
40397266 |
atagggttggtgtgatttgatattgtatgtatatgtacaacgtaataggcccaatcaaccataaaactttagcaaaaaattcaaattcctcccttgcttc |
40397365 |
T |
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| Q |
119 |
cacttctgttgatagattttcttgcaaagttgtttgtcatcttagtacca--aatcacctttctgtctttcagctctcaaattcatattcatttttctac |
216 |
Q |
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| T |
40397366 |
cacttctgttgatagattttcttgcaaagttgtttgtcctcttagtaccaacaatcacctttctgtctttcagctctcaaattcatattcatttttctac |
40397465 |
T |
|
| Q |
217 |
tattannnnnnnnnncttttccaaaccaaacatattcaactttcaagtcatatctagggctttatttttcgtattccaacatgtatattggatttatttg |
316 |
Q |
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| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40397466 |
tttaattttttttt--ttttccaaaccaaacatattcaactttcaagtcatatctagggctttatttttcgtattccaacatgtatattggatttatttg |
40397563 |
T |
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| Q |
317 |
tcatatgcatttggcgtcttccgtatacacaggttct |
353 |
Q |
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| T |
40397564 |
tcatatgcatttggcgtcttccgtatacacaggttct |
40397600 |
T |
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