View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15904_low_11 (Length: 233)
Name: NF15904_low_11
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15904_low_11 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 36526658 - 36526475
Alignment:
| Q |
1 |
ggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36526658 |
ggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcg |
36526559 |
T |
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| Q |
101 |
atgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
184 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36526558 |
atgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagctagaggtctaaaagaagc |
36526475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 37923996 - 37923804
Alignment:
| Q |
18 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaag |
117 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||| |||| ||||| | |||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
37923996 |
ggggaagtgaagtgcaatgttgatgcaacaatttttaaggaacaaggttgtta--gagtcggtatgtgtctaagaggggatcgaggggagttcattaaag |
37923899 |
T |
|
| Q |
118 |
caaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttt |
212 |
Q |
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| T |
37923898 |
caaagacaacatagtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataaaatggcttggtaccttgaggttt |
37923804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4430480 - 4430689
Alignment:
| Q |
1 |
ggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtg-atc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
4430480 |
ggattagaccagtagctggggaagtgaagtgcaatgttgatgcgacaatttttaaggatcaaggatgttatggggtcggtatgtgtctaagaggtgtatc |
4430579 |
T |
|
| Q |
100 |
gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttgg |
199 |
Q |
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|| |||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||| |
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| T |
4430580 |
gagaggagttcatttaagcaaatacatcatggtacaaaagtctcccacaacccaaagaagcataagcagaaggtctaaaataagcgataatatggcttga |
4430679 |
T |
|
| Q |
200 |
tactatgagg |
209 |
Q |
| |
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|||||||||| |
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| T |
4430680 |
tactatgagg |
4430689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 23269759 - 23269949
Alignment:
| Q |
13 |
tagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcat |
112 |
Q |
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|||||| |||||||||||| |||||||| || |||| ||||||||| |||| ||||||||| | | |||||| | | ||| |||||| |||||||||| |
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| T |
23269759 |
tagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatatgtgcttgacaggggatcgaggggagttcat |
23269858 |
T |
|
| Q |
113 |
taaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtact |
203 |
Q |
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| ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||||||| || ||||||||||||| |
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| T |
23269859 |
gagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaagcgagaaagtggcttggtact |
23269949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
| Q |
17 |
tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa |
116 |
Q |
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||||||||||||||| ||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| | |
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| T |
10785850 |
tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga |
10785949 |
T |
|
| Q |
117 |
gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa |
189 |
Q |
| |
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|| |||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||| |
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| T |
10785950 |
gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa |
10786022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 40728566 - 40728378
Alignment:
| Q |
18 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta |
114 |
Q |
| |
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||||| ||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||| ||||| |||||||| || ||||||||| |
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| T |
40728566 |
ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta |
40728476 |
T |
|
| Q |
115 |
aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttt |
212 |
Q |
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||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||| |||||||| |
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| T |
40728475 |
gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcgacaaaatggtttggtactttgaggttt |
40728378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 13019258 - 13019138
Alignment:
| Q |
69 |
tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa |
168 |
Q |
| |
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||||||||||| ||| |||| ||||| ||| || |||||||||||| || |||||| | |||| ||||| ||||||||| |||| || |||||||||| |
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| T |
13019258 |
tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa |
13019159 |
T |
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| Q |
169 |
gaggtctaaaagaagcgataa |
189 |
Q |
| |
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| ||| ||||||||||||||| |
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| T |
13019158 |
gtggtttaaaagaagcgataa |
13019138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29468748 - 29468537
Alignment:
| Q |
1 |
ggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc |
99 |
Q |
| |
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|||||||||| ||||| | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| | | |
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| T |
29468748 |
ggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtgc |
29468650 |
T |
|
| Q |
100 |
gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttgg |
199 |
Q |
| |
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|| ||||||||||| ||| |||||| | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||| |||| ||||||||| |
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| T |
29468649 |
gaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaaaaagaaataaagtggcttgg |
29468550 |
T |
|
| Q |
200 |
tactatgaggttt |
212 |
Q |
| |
|
|||| |||||||| |
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|
| T |
29468549 |
tactttgaggttt |
29468537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 18998 - 18846
Alignment:
| Q |
33 |
aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg |
131 |
Q |
| |
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||||||||| || ||||||| ||||| |||||||||| | |||||| |||||||| ||||| |||| | |||||| |||| ||| |||||| | ||| |
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| T |
18998 |
aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg |
18900 |
T |
|
| Q |
132 |
tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcg |
185 |
Q |
| |
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| |||||||||||||||||||| || || ||||||||||| ||||||||||| |
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|
| T |
18899 |
tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg |
18846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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