View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15904_low_12 (Length: 215)
Name: NF15904_low_12
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15904_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 44662816 - 44662620
Alignment:
| Q |
1 |
gaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatgatgaag |
100 |
Q |
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| T |
44662816 |
gaaggaaacaacatggcaatgactttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaaactctcaagagaagagaaacatgatgaag |
44662717 |
T |
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| Q |
101 |
agaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatgctcagactat |
197 |
Q |
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| T |
44662716 |
agaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcaataattgctcactatgctcagactat |
44662620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 44685083 - 44685034
Alignment:
| Q |
148 |
gaaacagatgccaatttggatgcagtaattgctcactatgctcagactat |
197 |
Q |
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| T |
44685083 |
gaaaaagatgccaatttggatgcaataattgctcgctatgcggagactat |
44685034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 29339480 - 29339675
Alignment:
| Q |
1 |
gaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatg------ |
94 |
Q |
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| T |
29339480 |
gaaggaagcaacatgacaatggctatcattcctgatgcagagatgttgccaacagttgttggcaatgccaaactctcaggagaagagagacatgcaaata |
29339579 |
T |
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| Q |
95 |
---atgaagagaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatg |
187 |
Q |
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| T |
29339580 |
ttcatgaagaggacattaatagacttaccaacattgctatcacacaatgcattggtgaaactgatgccaatttagatgcagtaattactcactatg |
29339675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 29352642 - 29352837
Alignment:
| Q |
1 |
gaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatg------ |
94 |
Q |
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| T |
29352642 |
gaaggaagcaacatgacaatggctatcattcctgatgcagagatgttgccaacagttgttggcattgccaaactctcagaagaagagagacatgcaaata |
29352741 |
T |
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| Q |
95 |
---atgaagagaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatg |
187 |
Q |
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| T |
29352742 |
ttcatgaagaggacattaatagacttaccaacattgctatcacacaatgcattggtgaaactgatgccaatttagatgcagtaattgctcactatg |
29352837 |
T |
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