View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15904_low_4 (Length: 342)
Name: NF15904_low_4
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15904_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 45671518 - 45671848
Alignment:
| Q |
13 |
aatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacatttgtaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45671518 |
aatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacatttgtaag |
45671617 |
T |
|
| Q |
113 |
ctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacatatttgagttaatcaattggctg----aagttagtatttcttaccctttgaacg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
45671618 |
ctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacagatttgagttaatcaattggctgaaacaagttagtatttcttacccgttgaacg |
45671717 |
T |
|
| Q |
209 |
agtcgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagttcaacag |
308 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45671718 |
agccgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagttcaacag |
45671817 |
T |
|
| Q |
309 |
cactggcagccatgacatgatgatgtccatc |
339 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
45671818 |
cactggcagccatgacatgatgatgaccatc |
45671848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University