View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15904_low_6 (Length: 326)

Name: NF15904_low_6
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15904_low_6
NF15904_low_6
[»] chr4 (6 HSPs)
chr4 (1-309)||(42715591-42715900)
chr4 (4-214)||(42761229-42761439)
chr4 (4-214)||(42742408-42742618)
chr4 (4-214)||(42751767-42751977)
chr4 (4-214)||(42736081-42736291)
chr4 (4-214)||(42768156-42768366)
[»] chr5 (2 HSPs)
chr5 (4-214)||(23041790-23042000)
chr5 (4-105)||(37016363-37016464)
[»] chr7 (1 HSPs)
chr7 (4-105)||(31144731-31144832)
[»] chr2 (1 HSPs)
chr2 (65-104)||(29560925-29560964)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 42715591 - 42715900
Alignment:
Q  1 gttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42715591 gttgtcatgattgctgacttgacagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaag 42715690  T
Q  101 ttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42715691 ttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgc 42715790  T
Q  201 ggtgatgtcaggctagaacaatagaaaac-aaaatcaaaattgcaagatcacagtaagattgagttattataagatcaactaaaatgggatagtcatatt 299  Q
    |||||||||||||||||||||  |||||| ||||||| |||||||| |  ||| ||||||| ||||||||||||||||||||| || |||||||||||||    
T  42715791 ggtgatgtcaggctagaacaacggaaaacaaaaatcataattgcaataatacaataagattaagttattataagatcaactaatataggatagtcatatt 42715890  T
Q  300 caaaacagaa 309  Q
    ||||| ||||    
T  42715891 caaaatagaa 42715900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 42761229 - 42761439
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || |||||||||||||||||||| ||||| |    
T  42761229 gtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggacatgacatcgaagtgc 42761328  T
Q  104 ctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgcggt 203  Q
    |||||||| || | ||| ||||||| || |||||||||   | ||| |  |||||||||  |||||||||||| |||||||||| |||||||||||| ||    
T  42761329 ctgacatagtaataaaaggagttcttcgcttatcatatgaattttctgtaggagatatagcttcactataagctgcaattatgttgactcctggtgcagt 42761428  T
Q  204 gatgtcaggct 214  Q
    |||||||||||    
T  42761429 gatgtcaggct 42761439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 42742408 - 42742618
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || |||||||||||||||| ||| ||||| |    
T  42742408 gtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggacatgccatcgaagtgc 42742507  T
Q  104 ctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgcggt 203  Q
    ||||||||||||| ||| ||||||| || |||||| ||||   |   || |||| ||||  ||| |||||||| |||||||| | || ||||||||| ||    
T  42742508 ctgacataatattaaaatgagttcttcgcttatcagattcacttggtgaaggaggtatagcttcgctataagctgcaattattttgattcctggtgcagt 42742607  T
Q  204 gatgtcaggct 214  Q
    |||||||||||    
T  42742608 gatgtcaggct 42742618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 42751767 - 42751977
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || |||||||||||||||| ||| ||||| |    
T  42751767 gtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggacatgccatcgaagtgc 42751866  T
Q  104 ctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgcggt 203  Q
    ||||||||||||| ||| ||||||| || |||||| ||||   |   || |||| ||||  ||| |||||||| |||||||| | || ||||||||| ||    
T  42751867 ctgacataatattaaaatgagttcttcgcttatcagattcacttggtgaaggaggtatagcttcgctataagctgcaattattttgattcctggtgcagt 42751966  T
Q  204 gatgtcaggct 214  Q
    |||||||||||    
T  42751967 gatgtcaggct 42751977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 42736291 - 42736081
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    ||||||||||||||||||||||| || |||||||||| |||||||| |||||| |  || |||||||| ||||||||||| ||||||||||||||||| |    
T  42736291 gtcatgattgctgacttgatagctgctggactccaatcaggatgaatagatttaagcagaccaacaagtccagcaacatgtggacatgacattgaagtgc 42736192  T
Q  104 ctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgcggt 203  Q
    |||||||| |  | ||| || || |||| |||||  || |   ||  || |||||| ||  |||||||||||| |||||||||| |||||||||||| ||    
T  42736191 ctgacatagtcataaaaggaattatgcgcttatcggatgcactttgtgaaggagatgtagattcactataagctgcaattatgttgactcctggtgctgt 42736092  T
Q  204 gatgtcaggct 214  Q
     ||||||||||    
T  42736091 aatgtcaggct 42736081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 42768156 - 42768366
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    |||||||| || ||||| |||||||| |||||||||| ||||||||||||||| | ||  |||||||  |||| |||||||||   ||||||||||||||    
T  42768156 gtcatgatcgcggacttaatagcagctggactccaatcaggatgaagagatttgattataccaacaatgccagaaacatgaggggttgacattgaagttc 42768255  T
Q  104 ctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgcggt 203  Q
    | |||| | || ||||| ||| ||||||||||||| ||| |||||  ||||||||   |  ||||||||||||||| | |||||||||||| ||| | ||    
T  42768256 ccgacaaagtaatgaaaggagatctgcgtttatcagatttttgttgagagggagaagcagcttcactataagcagcgactatgtcgactcccggtcctgt 42768355  T
Q  204 gatgtcaggct 214  Q
    |||||| ||||    
T  42768356 gatgtcgggct 42768366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 23042000 - 23041790
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| | |||||| |  ||| ||||||| ||||||||||||||||||| ||| ||||| |    
T  23042000 gtcatgattgctgacttgataacagctggactccaatcaggatggacagatttgagcagcgcaacaagtccagcaacatgaggacatgccatcgaagtgc 23041901  T
Q  104 ctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgcggt 203  Q
    ||||||||||||| ||| ||||||| || |||||| ||||   |   ||  ||| || |  |||||||||||| |||||||| | |||||||||||| ||    
T  23041900 ctgacataatattaaaaggagttcttcgcttatcagattcacttggtgaacgaggtaaagcttcactataagctgcaattattttgactcctggtgcagt 23041801  T
Q  204 gatgtcaggct 214  Q
    |||||||||||    
T  23041800 gatgtcaggct 23041790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 37016363 - 37016464
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    |||||||| || || ||||| ||||| ||||||||| |||||||||| |  || |  || || ||||  ||||||||||||||||| |||||||||||||    
T  37016363 gtcatgatggcagatttgatggcagctggactccaactaggatgaagtgtcttgagaagaccgacaatgccagcaacatgaggacaagacattgaagttc 37016462  T
Q  104 ct 105  Q
    ||    
T  37016463 ct 37016464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 31144731 - 31144832
Alignment:
Q  4 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 103  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||| | ||| |  || ||| ||   ||| ||||||||||||| ||||| |||||||    
T  31144731 gtcatgatagctgatttaatagctgcaggactccaattaggatgaagtgttttgataagtccagcagtgccaacaacatgaggacaagacatagaagttc 31144830  T
Q  104 ct 105  Q
    ||    
T  31144831 ct 31144832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 29560964 - 29560925
Alignment:
Q  65 caacaagaccagcaacatgaggacatgacattgaagttcc 104  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  29560964 caacaataccagcaacatgaggacatgacatagaagttcc 29560925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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