View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15904_low_7 (Length: 283)
Name: NF15904_low_7
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15904_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 2307359 - 2307609
Alignment:
| Q |
17 |
aagagatgcccttaactttgagtccatgatatgatgtaatattaggactcacattttattagcaatcttgattgaaaaaacaaagtaaaacttgataagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2307359 |
aagagatgcccttaactttgagtccatgatatgatgtaatattaggactcacattttattagcaatcttgattgaaaaaacaaagtaaaacttgataagc |
2307458 |
T |
|
| Q |
117 |
agaaaaatggggggannnnnnngttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtatacaactgatcaatgctaatttc |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2307459 |
agaaaaatggggggatttttttgttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtatacaactgatcaatgctaatttc |
2307558 |
T |
|
| Q |
217 |
gttnnnnnnnnttcctggcatgatgcatgcaaagggccataaacaaactag |
267 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2307559 |
gttaaaaaaaattcctggcatgatgcatgcaaagggccgtaaacaaactag |
2307609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 2316648 - 2316809
Alignment:
| Q |
97 |
caaagtaaaacttgataagcagaaaaatgggggg-annnnnnngttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtata |
195 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | ||||||||||||| | || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
2316648 |
caaagcaaaacttgataagcagaaaaatggggggaattttttagttagagatatctga------ttacagcatctatcttctgcagaaatatgcagtata |
2316741 |
T |
|
| Q |
196 |
caactgatcaatgctaatttcgttnnnnnnnnttcctggcatgatgcatgcaaagggccataaacaaactag |
267 |
Q |
| |
|
| |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
2316742 |
ccactg----ctgctaatttcgttaaaaaaaattcctcccatgatgcatgcaaagggccgtaaacaaactag |
2316809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 2316574 - 2316609
Alignment:
| Q |
62 |
gactcacattttattagcaatcttgattgaaaaaac |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2316574 |
gactcacattttattaacaatcttgattgaaaaaac |
2316609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University