View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15904_low_8 (Length: 281)
Name: NF15904_low_8
Description: NF15904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15904_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 1504166 - 1503911
Alignment:
| Q |
1 |
tggttaatgaactccaccatataataannnnnnnaggagaatcttgagtttgattcttgagtgaaatgaatatacgaaccaagctaagcacgtcaacgct |
100 |
Q |
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| T |
1504166 |
tggttaatgaactccaccatataacaaatttttcaggaaaatcttgagttcgatttttgagtgaaatgaatatacgaaccaagcg-----cgtcaacgct |
1504072 |
T |
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| Q |
101 |
atttttgctnnnnnnnnnnntagaatatacttttggaaacgacattgataattcatgaactgaattaaatcgagctgctgattcaactcaattccaaaat |
200 |
Q |
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| T |
1504071 |
atttttgctaaaagaaaaa-tagaatatacttttgaaaacgacattgataattcatgagctgaattaaatcgagctg---attcaactcaattccaaaat |
1503976 |
T |
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| Q |
201 |
cattagtcacattcatttcaattcaannnnnnnggttcaattcggtcggttggtgtttatgattt |
265 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
1503975 |
cattagtcacattcatttcaattcaatttttttggttcaattcgatcggttggtttttatgattt |
1503911 |
T |
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