View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15905_high_5 (Length: 252)
Name: NF15905_high_5
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15905_high_5 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0073 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 6986518 - 6986753
Alignment:
| Q |
17 |
atatattacaccaatatgtttcaactattaaagccctaaggacaatagatcctgcaggtgttttccttgaggcagttggggcaccaataagagattattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6986518 |
atatattacaccaatatgtttcaactattaaagccctaaggacaatagatcctgcaggtgttttccttgaggcagttggggcaccaataagagattattt |
6986617 |
T |
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| Q |
117 |
aagaggaaggagagatacaataaaatgcatagtgaccatgctgacagatgggacgagtgggaactcaagtgcatctggaaatcccggagatagccttctt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6986618 |
aagaggaaggagagatacaataaaatgcatagtgaccatgctgactgatgggacgagtgggaactcaagtgcatctggaaatcccggagatagccttctt |
6986717 |
T |
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| Q |
217 |
gaagagttgaatagagatgaagaaattcaagaaaat |
252 |
Q |
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| T |
6986718 |
gaggagttgaatagagatgaagaaattcaagaaaat |
6986753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 7045266 - 7045355
Alignment:
| Q |
17 |
atatattacaccaatatgtttcaactattaaagccctaaggacaatagatcctgcaggtgttttccttgaggcagttggggcaccaataa |
106 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
7045266 |
atatattacaccaatatgtttcaactattaaaaccctaaggacaatagatcatgcaggtgttttccttgaggcagttggtgaaccaataa |
7045355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 7045391 - 7045451
Alignment:
| Q |
192 |
tggaaatcccggagatagccttcttgaagagttgaatagagatgaagaaattcaagaaaat |
252 |
Q |
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| T |
7045391 |
tggaaatcccggaaatagccttcttcaagagttgaatagagatgaagaaattcaagaaaat |
7045451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 7045350 - 7045383
Alignment:
| Q |
134 |
caataaaatgcatagtgaccatgctgacagatgg |
167 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
7045350 |
caataaaatgcatagttaccatgctgacagatgg |
7045383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 31962801 - 31962570
Alignment:
| Q |
17 |
atatattacaccaatatgtttcaactattaaagccctaaggacaatagatcctgcaggtgttttccttgaggcagttggggcaccaataagagattattt |
116 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||| ||||| || |
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| T |
31962801 |
atatattacaccaatacgtttctactattaaagccctaaggacgatagatcctgctggtgttttccttgaggcagttggtgaaccaataagggattactt |
31962702 |
T |
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| Q |
117 |
aagaggaaggagagatacaataaaatgcatagtgaccatgctgacagatgggacgagtgggaactcaagtgcatctggaaatcccggagatagccttctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || || ||||||||||| |||||||| ||||||||||||||| |
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| T |
31962701 |
aagaggaaggagagatacaataaaatgcatagtgaccatgttgacagatgggactgggggaaattcaagtgcatccggaaatcctggagatagccttctt |
31962602 |
T |
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| Q |
217 |
gaagagttgaatagagatgaagaaattcaaga |
248 |
Q |
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| T |
31962601 |
gaagagttgaacagagatgaagaaattcaaga |
31962570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 31899003 - 31898772
Alignment:
| Q |
17 |
atatattacaccaatatgtttcaactattaaagccctaaggacaatagatcctgcaggtgttttccttgaggcagttggggcaccaataagagattattt |
116 |
Q |
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|||||||||||||||| ||||| || |||||||||||||| || ||||||||||| |||||||| |||||||||||||| | ||||||||| ||||| || |
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| T |
31899003 |
atatattacaccaatacgtttctacaattaaagccctaagaacgatagatcctgctggtgttttacttgaggcagttggtgaaccaataagggattactt |
31898904 |
T |
|
| Q |
117 |
aagaggaaggagagatacaataaaatgcatagtgaccatgctgacagatgggacgagtgggaactcaagtgcatctggaaatcccggagatagccttctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || || ||||||||||| |||||||| ||||||||||||||| |
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| T |
31898903 |
aagaggaaggagagatacaataaaatgcatagtgaccatgttgacagatgggactgggggaaattcaagtgcatcaggaaatcctggagatagccttctt |
31898804 |
T |
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| Q |
217 |
gaagagttgaatagagatgaagaaattcaaga |
248 |
Q |
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||||||||||| |||||||||||||||||||| |
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| T |
31898803 |
gaagagttgaacagagatgaagaaattcaaga |
31898772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 14099 - 14188
Alignment:
| Q |
17 |
atatattacaccaatatgtttcaactattaaagccctaaggacaatagatcctgcaggtgttttccttgaggcagttggggcaccaataa |
106 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
14099 |
atatattacaccaatatgtttcaactattaaaaccctaaggacaatagatcatgcaggtgttttccttgaggcagttggtgaaccaataa |
14188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 14224 - 14284
Alignment:
| Q |
192 |
tggaaatcccggagatagccttcttgaagagttgaatagagatgaagaaattcaagaaaat |
252 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14224 |
tggaaatcccggaaatagccttcttcaagagttgaatagagatgaagaaattcaagaaaat |
14284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 14183 - 14216
Alignment:
| Q |
134 |
caataaaatgcatagtgaccatgctgacagatgg |
167 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
14183 |
caataaaatgcatagttaccatgctgacagatgg |
14216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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