View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15905_low_1 (Length: 501)
Name: NF15905_low_1
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15905_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 496
Target Start/End: Complemental strand, 44851951 - 44851472
Alignment:
| Q |
9 |
tatgatgtaatctcaactgctgttgcattagcgcatatattgcgtgtaagtatacaaagggtagggacgtagtattgcgtgtcagtaagggatggatata |
108 |
Q |
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| T |
44851951 |
tatgatgtaatctcaactgctgttgcattagcgcatatattgcgtgtaagtatacaaagggtagggacgtagtattgcgtgtcagtatgggatggatata |
44851852 |
T |
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| Q |
109 |
aataaaggtgggaaatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgtagcatgcgatatatgaacaatacattttgtta |
208 |
Q |
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| T |
44851851 |
aataaaggtgggaaatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgtagcatgcgatatatgaacaatacattttgtta |
44851752 |
T |
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| Q |
209 |
cattcttctagacaacagacacatnnnnnnnncacttgaatcaatcaagaaggggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgta |
308 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851751 |
cattcttctagacaacagacacataaaaaa--------aatcaatcaagaaggggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgta |
44851660 |
T |
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| Q |
309 |
aaatagatgaagacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgctgacatattctttaactgtgcatagcagagtgg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851659 |
aaatagatgaagacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgctgacatattctttaactgtgcatagcagagtgg |
44851560 |
T |
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| Q |
409 |
ctcttcctctaagagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatcttcttggtctatgatgatgtcc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44851559 |
ctcttcctctaagagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatcttcttggtctataatgatgtcc |
44851472 |
T |
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