View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15905_low_2 (Length: 460)
Name: NF15905_low_2
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15905_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 5 - 460
Target Start/End: Original strand, 32164500 - 32164955
Alignment:
| Q |
5 |
caatactacacatgtcaatgtggcagtttgatcatatctacttttttcatgatcgtgtgtgatcataaagaaaaattaccttcttaacaagcagctggac |
104 |
Q |
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| T |
32164500 |
caatactacacatgtcaatgtggcagtttgatcatatctactttgctcatgatcgtgtgtgatcataaagaaaaattaccttcttaacaagcagctggac |
32164599 |
T |
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| Q |
105 |
tggttttataatcaccctaccgcagatgtgcatgttctgaaattgagtcttgtaaagctggagataaccgttcaggcataagaatcgaagagcttggcag |
204 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32164600 |
tggttttataatcaccctaccggagatgtgcatgttctgaaaatgagtcttgtaaagctggagataaccgttcaggcataagattcgaagagcttggcag |
32164699 |
T |
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| Q |
205 |
gagctgatgggtccgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtggtagaagcaagattgtctagctcgagagtcaataat |
304 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32164700 |
aagctgatgggttcgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtagtagaagcaagattgtctagctcgagagtcaataat |
32164799 |
T |
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| Q |
305 |
aactcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatgatggactcgtaagagaacagtgg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32164800 |
aactcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatgatggactcgtaagagaacagtgg |
32164899 |
T |
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| Q |
405 |
caacatggacatattctgtgttagggtgattatggaagagatgagggatagaacga |
460 |
Q |
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| T |
32164900 |
caacatggacataatctgtgttagggtgattatggaagagatgagggatagaacga |
32164955 |
T |
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