View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15905_low_3 (Length: 410)
Name: NF15905_low_3
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15905_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 27 - 398
Target Start/End: Complemental strand, 2602009 - 2601638
Alignment:
| Q |
27 |
aaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtttgtacttgtaannnnnnnnacatacaacaacg |
126 |
Q |
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| T |
2602009 |
aaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcataatagttatacttggcttgtacttgtaatttattttacatacaacaacg |
2601910 |
T |
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| Q |
127 |
gtgttgtaagggaagaacttaagtatatat--catagaatgaatttaatttgtctttgagttcactggacctagaaaatctaaaccttattttataacta |
224 |
Q |
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| T |
2601909 |
gtgttgtaagggaagaacttaagtatatatatcattgaatgaattt----tgtctttgatttcactggacctggaaaatctaaaccttattttataacta |
2601814 |
T |
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| Q |
225 |
taaaagttttgtcatagatgtgcttatatatgaaaatttttgcaggacggtaattgatttggaaatgaatttatcaaagtacaaaatgctcaagggaatt |
324 |
Q |
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| T |
2601813 |
tgtaagttttgtcatagatgtgcttatatatgaaaatttttgcaggacggtaattgatttggagatgaatttatcaaagtacaaaatgctcaaaggaatt |
2601714 |
T |
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| Q |
325 |
ggtatttggagatgaaggtggaagatattgagaga--tgtttttaaagcttatgtggaattaaacaagatgatttt |
398 |
Q |
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| T |
2601713 |
ggtatttggagatgaaggtagaagatattgagaaatgtgtttttaaagcttatgtggaattaaacaagatgatttt |
2601638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 27 - 398
Target Start/End: Complemental strand, 2615551 - 2615183
Alignment:
| Q |
27 |
aaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtttgtacttgtaannnnnnnn-acatacaacaac |
125 |
Q |
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| T |
2615551 |
aaaattcagagatgtttggaaggtatatgcaggtaaaacaaattacatcataatagttatacttggtttgtacttgtaatttttttttacatacaacaac |
2615452 |
T |
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| Q |
126 |
ggtgttgtaagggaagaacttaagtatatatcatagaatgaatttaatttgtctttgagttcactggacctagaaaatctaaaccttattttataactat |
225 |
Q |
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| T |
2615451 |
ggtgttgtaagggaagaatttaagtatatatcattgaatgaattg----tgtctttgagttcattggacctagaaaatttaaaccttattttataactat |
2615356 |
T |
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| Q |
226 |
aaaagttttgtcatagatgtgcttatatatgaaaatttttgcaggacggtaattgatttggaaatgaatttatcaaagtacaaaatgctcaagggaattg |
325 |
Q |
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| T |
2615355 |
ataagttttgtcataaatgtgcttatatatgaaaatttttgcaggacagtaattgatttggggatgaatttatcaaagtacaaaatgctcaagggaattg |
2615256 |
T |
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| Q |
326 |
gtatttggagatgaaggtggaagatattgagagatgtttttaaagcttatgtggaattaaacaagatgatttt |
398 |
Q |
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| T |
2615255 |
gtattcggagatgaaggtggaggatattgagagatgtttttaaagcttatgtggaattaaacaagatgatttt |
2615183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 398
Target Start/End: Original strand, 22193917 - 22194272
Alignment:
| Q |
27 |
aaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtttgtacttgtaannnnnnnnacatacaacaacg |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| | |
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| T |
22193917 |
aaaattcagagatgttaggaaggtatatgcaggtaaaacgaattacatctaaataattatacttggtttgtacttgtaattatttt-------------g |
22194003 |
T |
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| Q |
127 |
gtgttgtaagggaagaacttaagtatatatcatagaatgaatttaatttgtctttgagttcactggacctagaaaatctaaaccttattttataactata |
226 |
Q |
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| T |
22194004 |
gtgttgtaagggaagaatttaagtatatatcattgaatgaattg----tgtctttgagttcaatggacctagaaaatctaaaccttattttataacaata |
22194099 |
T |
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| Q |
227 |
aaagttttgtcatagatgtgcttatatatga-aaatttttgcaggacggtaattgatttggaaatgaatttatcaaagtacaaaatgctcaagggaattg |
325 |
Q |
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| T |
22194100 |
tatgttttgtcatagatgtgcttatatatgatttttttttgcaggacactaattgatttggagatgaatttatcaaagtagaaaatgctcaagggaattg |
22194199 |
T |
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| Q |
326 |
gtatttggagatgaaggtggaagatattgagagatgtttttaaagcttatgtggaattaaacaagatgatttt |
398 |
Q |
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| T |
22194200 |
gtatttggagataaaggtggaagatatttagagatgtttttaaagcttatgtggaactaagcaagatgatttt |
22194272 |
T |
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