View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15905_low_4 (Length: 387)
Name: NF15905_low_4
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15905_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 372
Target Start/End: Original strand, 41204477 - 41204824
Alignment:
| Q |
25 |
catcaatgccttgttgtttaacatagtgatgtatatgataatggtgatgatggtgttgaagatgctgttgaatttctgatgacgacgtttctttcttagg |
124 |
Q |
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| T |
41204477 |
catcaatgccttgttgtttaacagtgtgatgtatatgataatggtgatgatggtgatgatgatgctgttgaattgatgatgatgacctctttttcttagg |
41204576 |
T |
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| Q |
125 |
tttctcaacatatactttgactaacactgccttatctttgcggtaacttacctataaattattactcagagaggtaaattaaatagaaactccatatgtc |
224 |
Q |
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| T |
41204577 |
tttctcaacatatactttgactaacactgccttatctttgcggtaacttacctataaattattactcagagaggtaaattaaatagaaactccatatgtc |
41204676 |
T |
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| Q |
225 |
aaattaagcacagcacaaaattaggcactgattagagnnnnnnnntgtagaagtaactaatttacctgtttggtaggcattttggaacaaggtacgaagc |
324 |
Q |
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| T |
41204677 |
aaattaagcacagcacaaaattaggcactgattagagaaaaaaaatgtagaagtaactaatttacctgtttggtaggcattttggaacaaggtacgaagc |
41204776 |
T |
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| Q |
325 |
atgtatgctttttgtgaatttaattatgtttggttttggttaagtatt |
372 |
Q |
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| T |
41204777 |
atgtatgctttttgtgaatttaattatgtttggttttggttaagtatt |
41204824 |
T |
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